Miyakogusa Predicted Gene

Lj0g3v0187299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187299.1 tr|F4JFQ3|F4JFQ3_ARATH Methyl-CpG-binding domain
protein 4 OS=Arabidopsis thaliana GN=At3g07930
PE=4,33.18,4e-18,seg,NULL; 5-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA
GLYCOSYLASE,NULL,CUFF.11921.1
         (280 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g11620.1                                                        96   5e-20

>Glyma13g11620.1 
          Length = 259

 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query: 186 ASQKWDEAYRKRTPDNTWVPPRSHLHLIQEDHIRDPWRVLVICMLLNITTGRQV 239
           AS+KWDEAY+++TPDNTW PPRS + LIQEDH+ DPWRVLVICMLLN T G Q 
Sbjct: 103 ASEKWDEAYKRKTPDNTWKPPRSEIVLIQEDHLHDPWRVLVICMLLNRTAGGQT 156