Miyakogusa Predicted Gene

Lj0g3v0184609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0184609.1 tr|B9IB65|B9IB65_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775321 PE=4
SV=1,30.86,0.0000000000005, ,CUFF.11711.1
         (438 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g17330.1                                                       364   e-101
Glyma01g25750.1                                                       102   7e-22

>Glyma03g17330.1 
          Length = 786

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 248/579 (42%), Positives = 313/579 (54%), Gaps = 149/579 (25%)

Query: 1   MELQSCSHLHFIQTIKGGSVTKVLNVARGRPRLAFKEVADIYDCILFDKADAKAERSWTD 60
           MEL+ CSHLHFIQ IKGG V KV NVARG+P+L FK++ADIYD +L    D  AERS   
Sbjct: 1   MELRCCSHLHFIQAIKGGLVAKVPNVARGQPKLKFKKLADIYDGLLSHNDDGMAERSCLG 60

Query: 61  AWGCNA--NDGDDQKIINLDDDGFDNFTLKEMKESCQTSKRKHSQGFDLTEKRKIKVEDM 118
               +      D  +IINLDDD FDNFTL ++K SC+T KRKHSQG + + K  +KVED 
Sbjct: 61  EIEESPFETKPDASRIINLDDDNFDNFTLSQLKASCKTRKRKHSQGLN-SSKINMKVED- 118

Query: 119 SSLEEDYRTNQMAADDSDFIETLSSWRSKLSKNVKARKRKCTK--VSTCCSQEIVLVVNS 176
           SS+ EDYR  QMAADDSDF+ET+SSW++KLSKN+KA+ RKC K  +ST  +++I+LVV S
Sbjct: 119 SSILEDYREEQMAADDSDFLETISSWKTKLSKNMKAKIRKCFKEPIST-HTKDIMLVVKS 177

Query: 177 ---------------QEIHHGQQLPPSSGD----------SASLVDVKFEVPEADCFDGT 211
                          +EI +  + PPSS +             + D +   P  +   G+
Sbjct: 178 EPEEILNSQEFPSSCEEIQNSLEFPPSSEEILDCQKFSPSGEEIQDCQEFSPSLEAIQGS 237

Query: 212 ---------------------DYNSVAESKDEAEITHTW----------YLENELHYDW- 239
                                D  ++ E K E   T  +            E E+ +DW 
Sbjct: 238 QEFPPYSEEIENNQAIPFFIEDSVALVEVKSEVPETDCYGEPDDYSIIESQETEIIHDWN 297

Query: 240 --------EEHVDLIPLRMMSPSCLDLVINNSELSSDQTTNFPAIEF------------- 278
                   +EHVD IPLRM+ PSC+D+VINNS+LS+DQ+   PAIEF             
Sbjct: 298 LENELNEWQEHVDFIPLRMVRPSCMDIVINNSQLSNDQSPYMPAIEFESEEYITNPDLHY 357

Query: 279 ---------EDHNSDVDDNQLDGGNEPPASPPNVVTHKGLDC------------------ 311
                    EDHNSD+ DNQ DG  +   S PN VTHK LDC                  
Sbjct: 358 ISPQEISLVEDHNSDIHDNQPDGDTDTAVSLPNAVTHKDLDCSNDEFTTGAKDQVECIST 417

Query: 312 IDPECRDDNTFLGS-------------CNKYEFTAGAEIQAQPSSNIEH-CL-------- 349
           I+ +C +D    G+             C+  EFTAGAE Q +PSS IEH C         
Sbjct: 418 IEHDCSNDEFTAGAEDQVEHNSTIENDCSNDEFTAGAEDQVEPSSTIEHDCCNDEYSTTG 477

Query: 350 ---------------NPKGSPVSCSDNSPEYEKKQSFASVHDDKKRHVYEATDELTSFDD 394
                          NP G  V  SD+ PEYE+KQSFASV+ D+KRH   ATDELTS+D+
Sbjct: 478 AEDQVELSSTIEHGPNPDGCLVRHSDDPPEYEEKQSFASVNIDEKRHANVATDELTSWDE 537

Query: 395 LKSSPKLHRPEKLLSTRKAISPSSQEKLHKAMETVDTHH 433
              S KLH PEKLLSTRKAISPSS+E+L KA+E+VD +H
Sbjct: 538 CDGSSKLHCPEKLLSTRKAISPSSEERLCKAVESVDLNH 576


>Glyma01g25750.1 
          Length = 316

 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 74/101 (73%), Gaps = 5/101 (4%)

Query: 342 SSNIEHCLNPKGSPVSCSDNSPEYEKKQSFASVHDDKKRHVYEATDELTSFDDLKSSPKL 401
           SS IEH  NP    V  SD+ PEYE+KQSFASV+  +KRHV  ATDELTS+D+   S KL
Sbjct: 6   SSTIEHGPNPDECLVCHSDDPPEYEEKQSFASVNIAEKRHVNVATDELTSWDECDGSSKL 65

Query: 402 HRPEKLLSTRK-----AISPSSQEKLHKAMETVDTHHENNL 437
           H  E+LLSTRK     AISPSS+E+L KA+E+V+ +H+NNL
Sbjct: 66  HHSERLLSTRKMVSLQAISPSSEERLCKAVESVNLNHKNNL 106