Miyakogusa Predicted Gene

Lj0g3v0183689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0183689.1 tr|A4L9W4|A4L9W4_GOSHI Auxin response factor 3
OS=Gossypium hirsutum GN=ARF3 PE=2 SV=1,42.86,5e-18, ,CUFF.11633.1
         (159 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g36570.1                                                       147   5e-36
Glyma10g06080.1                                                       147   5e-36
Glyma13g20370.2                                                       120   5e-28
Glyma13g20370.1                                                       120   5e-28
Glyma12g29720.1                                                        93   1e-19
Glyma12g08110.1                                                        91   3e-19
Glyma11g20490.1                                                        84   6e-17
Glyma10g35480.1                                                        60   1e-09
Glyma13g40030.1                                                        58   5e-09

>Glyma19g36570.1 
          Length = 444

 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 98/135 (72%), Gaps = 10/135 (7%)

Query: 2   RLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHLN 58
           R  QHPDF FDG I +P FP   LGP +PFGCL ESTPAG+QGARHA+YG++LS+  H N
Sbjct: 162 RFPQHPDFSFDGQISLPAFPSNFLGPSNPFGCLAESTPAGIQGARHANYGISLSN-LHFN 220

Query: 59  KVHSGLFPAGFPLLNHSAAP---PSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQ 115
           K+ SGLF AGFP L+H+A+P    S ++    QK G T +NVSCLLSM  ST +  SKK 
Sbjct: 221 KLQSGLFQAGFPPLDHTASPVLRVSSNNAATMQKVG-TGDNVSCLLSM--STATQPSKKV 277

Query: 116 DDEKRPQLVLFGKTI 130
           DD K PQLVLFG+TI
Sbjct: 278 DDVKAPQLVLFGQTI 292


>Glyma10g06080.1 
          Length = 696

 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 98/135 (72%), Gaps = 9/135 (6%)

Query: 1   MRLSQHPDFPFDGHIPVPTFP---LGPRSP--FGCLPESTPAGMQGARHAHYGLTLSDHH 55
           +RL Q PDFP DG IP+ TFP   LGP +   FGCL ESTPAGMQGARHAHYGL+LSD  
Sbjct: 407 LRLPQQPDFPLDGQIPLSTFPSNLLGPSNTNQFGCLLESTPAGMQGARHAHYGLSLSD-L 465

Query: 56  HLNKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQ 115
           HL+K+ SGLF  GFP L+H+A P  VS+ +  QK  + SENVSCLL+MA ST+S  SKK 
Sbjct: 466 HLSKLQSGLFSTGFPSLDHAATPMRVSNSITLQKPNL-SENVSCLLTMANSTQS--SKKL 522

Query: 116 DDEKRPQLVLFGKTI 130
           D  K P LVLFG+ I
Sbjct: 523 DVGKTPSLVLFGQKI 537


>Glyma13g20370.2 
          Length = 659

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 105/185 (56%), Gaps = 29/185 (15%)

Query: 1   MRLSQHPDFPFDGHIPVPTFP---LGPRSP--FGCLPESTPAGMQGARHAHYGLTLSDHH 55
           +RL QHPDFP DG IP+PT P   LGP +   FGCL ESTPAGMQGARHAHYGL+LSD  
Sbjct: 410 LRLPQHPDFPLDGQIPLPTLPNNLLGPNNTNQFGCLLESTPAGMQGARHAHYGLSLSD-L 468

Query: 56  HLNKVHSGLFPAGFPLLNHSAAPPSVSSY-----LISQKSGMTSENVSCLLSMAGSTKSS 110
           HL+K+ SGL  AGFP L+H+A P  VS+      L S     + + +S +L+   ST  +
Sbjct: 469 HLSKLQSGLSSAGFPPLDHAATPMKVSNNRHCKSLASICPSSSVDTLSPVLTRNCSTDGN 528

Query: 111 NSK------------------KQDDEKRPQLVLFGKTISPSSRFGGHYEVLMESEDVGQT 152
            +K                  +    +R Q          ++   GH +V MESEDVG+T
Sbjct: 529 VNKVTNFFDGFGSALHQQGLHEHSSCERFQWCKDNHQEIEANMETGHCKVFMESEDVGRT 588

Query: 153 IDLSL 157
           +DLSL
Sbjct: 589 MDLSL 593


>Glyma13g20370.1 
          Length = 659

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 105/185 (56%), Gaps = 29/185 (15%)

Query: 1   MRLSQHPDFPFDGHIPVPTFP---LGPRSP--FGCLPESTPAGMQGARHAHYGLTLSDHH 55
           +RL QHPDFP DG IP+PT P   LGP +   FGCL ESTPAGMQGARHAHYGL+LSD  
Sbjct: 410 LRLPQHPDFPLDGQIPLPTLPNNLLGPNNTNQFGCLLESTPAGMQGARHAHYGLSLSD-L 468

Query: 56  HLNKVHSGLFPAGFPLLNHSAAPPSVSSY-----LISQKSGMTSENVSCLLSMAGSTKSS 110
           HL+K+ SGL  AGFP L+H+A P  VS+      L S     + + +S +L+   ST  +
Sbjct: 469 HLSKLQSGLSSAGFPPLDHAATPMKVSNNRHCKSLASICPSSSVDTLSPVLTRNCSTDGN 528

Query: 111 NSK------------------KQDDEKRPQLVLFGKTISPSSRFGGHYEVLMESEDVGQT 152
            +K                  +    +R Q          ++   GH +V MESEDVG+T
Sbjct: 529 VNKVTNFFDGFGSALHQQGLHEHSSCERFQWCKDNHQEIEANMETGHCKVFMESEDVGRT 588

Query: 153 IDLSL 157
           +DLSL
Sbjct: 589 MDLSL 593


>Glyma12g29720.1 
          Length = 700

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 78/136 (57%), Gaps = 13/136 (9%)

Query: 1   MRLSQHPDFPFDGHIPVPTFPLGP-----RSPFGCLPESTPAGMQGARHAHYGLTLSDHH 55
           +R  QHP+FP D   P+P+F   P      SP  CL ++ PAG+QGARHA  G++LSD H
Sbjct: 399 LRFPQHPEFPLDFQFPIPSFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLH 458

Query: 56  HLNKVHSGLFPAGFPLLN-HSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKK 114
             NK+  GL P     LN H+     + +  I+   G + E++SCLL+M  S KS   +K
Sbjct: 459 LNNKLQLGLLPTNVHQLNLHTG----ICNGNITNH-GKSKESLSCLLTMGNSNKS--LEK 511

Query: 115 QDDEKRPQLVLFGKTI 130
            D  KR Q +LFG+ I
Sbjct: 512 SDHVKRHQFLLFGQPI 527


>Glyma12g08110.1 
          Length = 701

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 8/129 (6%)

Query: 5   QHPDFPFDGHIPVPTF---PLGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHLNKVH 61
           QHPDFP D   P+P F    LGP SP     ++ PAG+QGARHA +G +LSD H  NK+ 
Sbjct: 405 QHPDFPLDVQFPIPMFSGNQLGPNSPLCGFSDNAPAGIQGARHAQFGKSLSDLHLNNKLQ 464

Query: 62  SGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQDDEKRP 121
            G+ P     ++       +S+  +      + E++SC L+M  STKS   +K DD K+ 
Sbjct: 465 LGMLPTN---IHQLGVYNEISNGNMMTNHDKSKESLSCFLTMGKSTKS--LEKSDDVKKH 519

Query: 122 QLVLFGKTI 130
           Q +LFG+ I
Sbjct: 520 QFLLFGQPI 528


>Glyma11g20490.1 
          Length = 697

 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 72/130 (55%), Gaps = 8/130 (6%)

Query: 5   QHPDFPFDGHIPVPTFPL---GPRSPFGCLPESTPAGMQGARHAHYGLTLSD-HHHLNKV 60
           QHPDFP D   P+P       GP SP     ++ PAG+QGARHA +G +LSD H + NK+
Sbjct: 399 QHPDFPLDVQFPIPMLSGNQHGPNSPLCGFSDNAPAGIQGARHAQFGKSLSDLHLNNNKL 458

Query: 61  HSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQDDEKR 120
             G+ P     L        +SS  +  K   + E++SC L+M  S+KS   +K DD K+
Sbjct: 459 QLGMLPTNIHQLG--GVYTGISSGNMMTKHDKSKESLSCFLTMGKSSKS--LEKSDDVKK 514

Query: 121 PQLVLFGKTI 130
            Q +LFG+ I
Sbjct: 515 HQFLLFGQPI 524


>Glyma10g35480.1 
          Length = 298

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 9/135 (6%)

Query: 2   RLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAG-MQGARHAHYGLTLSDHHHL 57
           R  Q P F     +P+P+F    L   +    + +S  +G +QGARHA +GL+ SD    
Sbjct: 92  RFLQDPYFQVINQLPMPSFSSNLLNYTNSLCTIQDSNSSGGIQGARHAQFGLSPSD-FPF 150

Query: 58  NKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENV--SCLLSMAGSTKSSNSKKQ 115
           NK+ + +   GF  L+H+AA P        + +  T  NV  SCLL++    +  N K+ 
Sbjct: 151 NKLPADMLLGGFSRLDHAAAQPIRPPCGTYKNNTTTKANVGISCLLTVGNPGQ--NFKES 208

Query: 116 DDEKRPQLVLFGKTI 130
           ++ K P ++LFGK I
Sbjct: 209 NETKAPHILLFGKLI 223


>Glyma13g40030.1 
          Length = 670

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 41/189 (21%)

Query: 9   FPFDGHIPVPTFPLGPRSPFGCLP------ESTPAGMQGARHAHYGLTLSDHHHLNKVHS 62
           FP D   P+P+F   P              ++ PAG+QGARH+  G++LSD H  NK+  
Sbjct: 388 FPLDVQFPIPSFSGNPFGSSSSSSPFCCLSDNAPAGIQGARHSQIGISLSDLHLNNKLQL 447

Query: 63  GLFPAGFPLLN-HSAAPPSVSSYLISQKSGMTSENVSC-----------------LLSMA 104
           GL P     LN H+    + S   +S    M + N++                  +L+  
Sbjct: 448 GLLPTKVHQLNLHAGISNAKSKESLSSLLSMGNSNMTLEKSDHVKRHHFLLFGQPILTEQ 507

Query: 105 GSTKSSNSKKQDDEKR----------PQLVLFGKTISPSSRFGG-------HYEVLMESE 147
             ++SS+    DDE +           Q  +    +S ++ F         H +V MESE
Sbjct: 508 QISRSSSDVATDDENKEKKKKGFLSDSQSSVSPGNLSSTAEFSWQLGSDTSHCKVFMESE 567

Query: 148 DVGQTIDLS 156
           DVG+T+DLS
Sbjct: 568 DVGRTLDLS 576