Miyakogusa Predicted Gene

Lj0g3v0181719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181719.1 Non Chatacterized Hit- tr|C0HHI9|C0HHI9_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,34.92,1e-18,ZINC FINGER,
CCHC DOMAIN CONTAINING 11,NULL; POLY(A) POLYMERASE CID
(PAP)-RELATED,NULL; no descripti,CUFF.11581.1
         (319 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g34420.1                                                       472   e-133
Glyma18g03900.1                                                       433   e-121
Glyma06g16630.2                                                       119   3e-27
Glyma06g16630.3                                                       119   3e-27
Glyma06g16630.1                                                       119   4e-27
Glyma07g09020.1                                                        91   2e-18
Glyma03g02290.1                                                        90   4e-18

>Glyma11g34420.1 
          Length = 455

 Score =  472 bits (1215), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/279 (80%), Positives = 255/279 (91%)

Query: 1   MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60
           MST SMLDIV++DILRVVTPLQEDW IRFAIINDFRSIVESVESLRGATVEPYGSFVSNL
Sbjct: 1   MSTHSMLDIVVNDILRVVTPLQEDWEIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60

Query: 61  FTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIF 120
           FTRWGDLDISIELSNG HISS GK QKQ LLG+++KAL++KGG  NLQFIS+ARVPIL F
Sbjct: 61  FTRWGDLDISIELSNGLHISSAGKKQKQTLLGEVLKALRMKGGGSNLQFISNARVPILKF 120

Query: 121 KSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFN 180
           KS RQGVSCDISINNL G +KSK+LLWI++IDGRFR MVL+VKEWAKAHKINNSK GTFN
Sbjct: 121 KSYRQGVSCDISINNLPGQMKSKILLWINKIDGRFRHMVLLVKEWAKAHKINNSKAGTFN 180

Query: 181 SYSLSLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISD 240
           SYSLSLLVIF+FQTC+PAI PPLKD+YPGNM+D L G+R+DAE+ IAETC+ANINR IS+
Sbjct: 181 SYSLSLLVIFYFQTCIPAIFPPLKDIYPGNMIDDLIGIRSDAENLIAETCDANINRFISN 240

Query: 241 KSRPINRKSLPELFVEFLRKFAQMDSWASELGICPYTGQ 279
           ++R INRKS+ ELFV+F+ KFA+MDS A E+GICPYTG+
Sbjct: 241 RARSINRKSVAELFVDFVGKFAKMDSMAVEMGICPYTGK 279


>Glyma18g03900.1 
          Length = 260

 Score =  433 bits (1113), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/260 (80%), Positives = 235/260 (90%)

Query: 1   MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60
           MST S LDIV++DILRVVTP+QEDW IRFAIIND RSIVESVESLRGATVEP+GSFVSNL
Sbjct: 1   MSTHSTLDIVVNDILRVVTPVQEDWEIRFAIINDLRSIVESVESLRGATVEPFGSFVSNL 60

Query: 61  FTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIF 120
           FTRWGDLDISIELSNG HISS GK QKQ  LGD++KAL++KGG  NLQFIS+ARVPIL F
Sbjct: 61  FTRWGDLDISIELSNGLHISSAGKKQKQTFLGDVLKALRMKGGGSNLQFISNARVPILKF 120

Query: 121 KSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFN 180
           KS RQGVSCDISINNL G +KSK+LLWI++IDGRFR MVL+VKEWAKAHKINNSK GTFN
Sbjct: 121 KSYRQGVSCDISINNLPGQMKSKILLWINKIDGRFRHMVLLVKEWAKAHKINNSKAGTFN 180

Query: 181 SYSLSLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISD 240
           SYSLSLLVIF+FQTC+PAI PPLKD+YPGNMVD L GVR+DAE+ IA+TC+ANINR IS+
Sbjct: 181 SYSLSLLVIFYFQTCIPAIFPPLKDIYPGNMVDDLIGVRSDAENLIAQTCDANINRFISN 240

Query: 241 KSRPINRKSLPELFVEFLRK 260
           ++R INRKS+ ELFVEF+ K
Sbjct: 241 RARSINRKSVAELFVEFIGK 260


>Glyma06g16630.2 
          Length = 316

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 19/275 (6%)

Query: 7   LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGAT--VEPYGSFVSNLFTRW 64
           LD +L D      P   D+  R  +++ F ++ + +      +  VE YGSFV ++F   
Sbjct: 35  LDRLLCDTFIRQCPTPLDYDNRRDLVHIFNTMTKEIYGNGDGSPVVEEYGSFVMDMFDGK 94

Query: 65  GDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRR 124
            D+D+S+  +N   +S   K          +++++ KG    LQ I  ARVPI+      
Sbjct: 95  SDIDLSLNFNNSIEVSRQKKISALYRFNKKLQSIQSKGHVTGLQLIFSARVPIIKVTDSG 154

Query: 125 QGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSL 184
            G+ CD+S++N  G+ KS ++  I  ID RFR +  ++K WAK H IN+ K  T +S+S+
Sbjct: 155 TGIECDLSVDNRDGINKSHIIRAISDIDERFRKLCFLMKSWAKVHDINSPKDSTLSSFSI 214

Query: 185 SLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISDKSRP 244
              V FH QT  P ILPP   +              D   ++A+      N         
Sbjct: 215 VSFVAFHLQTRNPPILPPFSILLK----------EGDNPAYVAKVVETYFNY------GK 258

Query: 245 INRKSLPELFVEFLRKFAQMDS-WASELGICPYTG 278
            N++SL  LF+  L K A +++ W        Y G
Sbjct: 259 QNKESLAMLFITLLVKLASVENLWQKGFCASLYEG 293


>Glyma06g16630.3 
          Length = 324

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 19/275 (6%)

Query: 7   LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGAT--VEPYGSFVSNLFTRW 64
           LD +L D      P   D+  R  +++ F ++ + +      +  VE YGSFV ++F   
Sbjct: 43  LDRLLCDTFIRQCPTPLDYDNRRDLVHIFNTMTKEIYGNGDGSPVVEEYGSFVMDMFDGK 102

Query: 65  GDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRR 124
            D+D+S+  +N   +S   K          +++++ KG    LQ I  ARVPI+      
Sbjct: 103 SDIDLSLNFNNSIEVSRQKKISALYRFNKKLQSIQSKGHVTGLQLIFSARVPIIKVTDSG 162

Query: 125 QGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSL 184
            G+ CD+S++N  G+ KS ++  I  ID RFR +  ++K WAK H IN+ K  T +S+S+
Sbjct: 163 TGIECDLSVDNRDGINKSHIIRAISDIDERFRKLCFLMKSWAKVHDINSPKDSTLSSFSI 222

Query: 185 SLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISDKSRP 244
              V FH QT  P ILPP   +              D   ++A+      N         
Sbjct: 223 VSFVAFHLQTRNPPILPPFSILLK----------EGDNPAYVAKVVETYFNY------GK 266

Query: 245 INRKSLPELFVEFLRKFAQMDS-WASELGICPYTG 278
            N++SL  LF+  L K A +++ W        Y G
Sbjct: 267 QNKESLAMLFITLLVKLASVENLWQKGFCASLYEG 301


>Glyma06g16630.1 
          Length = 334

 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 19/275 (6%)

Query: 7   LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGAT--VEPYGSFVSNLFTRW 64
           LD +L D      P   D+  R  +++ F ++ + +      +  VE YGSFV ++F   
Sbjct: 35  LDRLLCDTFIRQCPTPLDYDNRRDLVHIFNTMTKEIYGNGDGSPVVEEYGSFVMDMFDGK 94

Query: 65  GDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRR 124
            D+D+S+  +N   +S   K          +++++ KG    LQ I  ARVPI+      
Sbjct: 95  SDIDLSLNFNNSIEVSRQKKISALYRFNKKLQSIQSKGHVTGLQLIFSARVPIIKVTDSG 154

Query: 125 QGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSL 184
            G+ CD+S++N  G+ KS ++  I  ID RFR +  ++K WAK H IN+ K  T +S+S+
Sbjct: 155 TGIECDLSVDNRDGINKSHIIRAISDIDERFRKLCFLMKSWAKVHDINSPKDSTLSSFSI 214

Query: 185 SLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISDKSRP 244
              V FH QT  P ILPP   +              D   ++A+      N         
Sbjct: 215 VSFVAFHLQTRNPPILPPFSILLK----------EGDNPAYVAKVVETYFNY------GK 258

Query: 245 INRKSLPELFVEFLRKFAQMDS-WASELGICPYTG 278
            N++SL  LF+  L K A +++ W        Y G
Sbjct: 259 QNKESLAMLFITLLVKLASVENLWQKGFCASLYEG 293


>Glyma07g09020.1 
          Length = 460

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 8/154 (5%)

Query: 53  YGSFVSNLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISH 112
           YGS  ++      D+D+ + +      + + K++    L D++++  L+    N+Q ++ 
Sbjct: 182 YGSCANSFGVSKSDIDVCLAIEE----ADMEKSKIIMKLADILQSDNLQ----NVQALTR 233

Query: 113 ARVPILIFKSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKIN 172
           ARVPI+       G+SCDI INNL  V+ +KLL     ID R R +  ++K WAK+ ++N
Sbjct: 234 ARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAHIDPRLRQLAFIIKHWAKSRRVN 293

Query: 173 NSKTGTFNSYSLSLLVIFHFQTCVPAILPPLKDV 206
            +  GT +SY+  L+ I   Q   PAILP L+++
Sbjct: 294 ETYHGTLSSYAYVLMCIHFLQMRRPAILPCLQEM 327


>Glyma03g02290.1 
          Length = 731

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 8/154 (5%)

Query: 53  YGSFVSNLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISH 112
           YGS  ++      D+D+ + +      + + K++    L D++++  L+    N+Q ++ 
Sbjct: 453 YGSCANSFGVSKSDIDVCLAIEE----ADMEKSKIIMKLADILQSDNLQ----NVQALTR 504

Query: 113 ARVPILIFKSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKIN 172
           ARVPI+       G+SCDI INNL  V+ +KLL     ID R R +  ++K WAK+ ++N
Sbjct: 505 ARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAHIDPRLRQLAFIIKHWAKSRRVN 564

Query: 173 NSKTGTFNSYSLSLLVIFHFQTCVPAILPPLKDV 206
            +  GT +SY+  L+ I   Q   PAILP L+++
Sbjct: 565 ETYHGTLSSYAYVLMCIHFLQMRRPAILPCLQEM 598