Miyakogusa Predicted Gene

Lj0g3v0180079.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180079.1 tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38
kDa subunit OS=Zea mays PE=2 SV=1,54.5,1e-38,zf-CCCH,Zinc finger,
CCCH-type; ZF_C3H1,Zinc finger, CCCH-type; seg,NULL; U2AUXFACTOR,U2
auxiliary f,CUFF.11429.1
         (153 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g20090.2                                                       137   3e-33
Glyma07g20090.1                                                       137   3e-33
Glyma20g00950.1                                                       134   4e-32
Glyma03g34840.1                                                       130   6e-31
Glyma19g37530.1                                                       130   6e-31
Glyma12g30590.2                                                       124   5e-29
Glyma12g30590.1                                                       124   5e-29
Glyma15g39220.1                                                        48   4e-06
Glyma08g17310.1                                                        48   4e-06

>Glyma07g20090.2 
          Length = 271

 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 68/77 (88%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYVQFREED+        HGRFY+ RPIIA+FSPVTDFREATCRQ+EENSCNRGGY
Sbjct: 108 MIGNVYVQFREEDQAAKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVKLIGRDLRR+L
Sbjct: 168 CNFMHVKLIGRDLRRRL 184


>Glyma07g20090.1 
          Length = 271

 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 68/77 (88%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYVQFREED+        HGRFY+ RPIIA+FSPVTDFREATCRQ+EENSCNRGGY
Sbjct: 108 MIGNVYVQFREEDQAAKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVKLIGRDLRR+L
Sbjct: 168 CNFMHVKLIGRDLRRRL 184


>Glyma20g00950.1 
          Length = 268

 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 67/77 (87%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYVQFREED+         GRFY+ RPIIA+FSPVTDFREATCRQ+EENSCNRGGY
Sbjct: 108 MIGNVYVQFREEDQAAKALHALRGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVKLIGRDLRR+L
Sbjct: 168 CNFMHVKLIGRDLRRRL 184


>Glyma03g34840.1 
          Length = 314

 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 63/77 (81%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQFREED          GRFYSGRPII +FSPVTDFREATCRQYEEN CNRGGY
Sbjct: 112 MVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGY 171

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I RDLRRKL
Sbjct: 172 CNFMHLKKISRDLRRKL 188


>Glyma19g37530.1 
          Length = 314

 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 63/77 (81%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQFREED          GRFYSGRPII +FSPVTDFREATCRQYEEN CNRGGY
Sbjct: 112 MVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGY 171

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I RDLRRKL
Sbjct: 172 CNFMHLKKISRDLRRKL 188


>Glyma12g30590.2 
          Length = 315

 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQFREE+          GRFY+GRPII +FSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 108 MVGNVYVQFREEEHAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I R+LRR+L
Sbjct: 168 CNFMHLKRISRELRRQL 184


>Glyma12g30590.1 
          Length = 315

 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQFREE+          GRFY+GRPII +FSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 108 MVGNVYVQFREEEHAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I R+LRR+L
Sbjct: 168 CNFMHLKRISRELRRQL 184


>Glyma15g39220.1 
          Length = 530

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 3   GNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEEN---SCNRGG 59
           GNVYVQ++  D         +GR+++G+ +  +F  +T ++ A C +Y ++   +C+ G 
Sbjct: 269 GNVYVQYKSLDSALLAYNSVNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGT 328

Query: 60  YCNFMH 65
            CNF+H
Sbjct: 329 ACNFIH 334


>Glyma08g17310.1 
          Length = 561

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 3   GNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEEN---SCNRGG 59
           GNVYVQ++  D         +GR+++G+ +  +F  +T ++ A C +Y ++   +C+ G 
Sbjct: 287 GNVYVQYKSLDSALLAYNTVNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGT 346

Query: 60  YCNFMH 65
            CNF+H
Sbjct: 347 TCNFIH 352