Miyakogusa Predicted Gene
- Lj0g3v0180009.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0180009.1 Non Chatacterized Hit- tr|I1H2U9|I1H2U9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,45.65,4e-19,TRANSCRIPTION FACTOR X1-LIKE,NULL; RIBONUCLEASE P
PROTEIN SUBUNIT P38-RELATED,NULL; XH,Uncharacteris,CUFF.11421.1
(107 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma18g04310.1 163 3e-41
Glyma08g23240.2 100 3e-22
Glyma08g23240.1 100 3e-22
Glyma07g02740.2 96 1e-20
Glyma07g02740.1 96 1e-20
Glyma02g41580.1 86 7e-18
Glyma11g34010.3 84 4e-17
Glyma11g34010.2 84 4e-17
Glyma11g34010.1 84 4e-17
Glyma18g04320.1 84 4e-17
Glyma04g18690.1 80 6e-16
Glyma08g36280.1 79 2e-15
Glyma13g41150.1 77 6e-15
Glyma15g04250.1 73 7e-14
Glyma16g17220.1 69 1e-12
Glyma15g33630.1 69 1e-12
Glyma15g33680.1 65 2e-11
Glyma15g33600.1 61 3e-10
Glyma02g06000.1 60 6e-10
Glyma15g33660.1 58 2e-09
Glyma11g34020.1 58 2e-09
Glyma0175s00200.1 52 2e-07
Glyma18g04290.1 51 3e-07
>Glyma18g04310.1
Length = 247
Score = 163 bits (413), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 88/105 (83%)
Query: 1 MEQLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQ 60
ME L+ VE L SSLVVKE+QY+QE+ DAR+ES+ SL+ MFRGRSQLGIKRMGELDPKPFQ
Sbjct: 67 MEYLDHVETLYSSLVVKENQYRQELHDAREESIKSLRGMFRGRSQLGIKRMGELDPKPFQ 126
Query: 61 TFCSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNGIPQ 105
C QKYS EQWQ+ SAKLCS+WEENLKD WHPF IEVNGI Q
Sbjct: 127 HLCLQKYSDEQWQEKSAKLCSAWEENLKDPTWHPFNKIEVNGILQ 171
>Glyma08g23240.2
Length = 629
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 1 MEQLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRG-RSQLGIKRMGELDPKPF 59
++ LE +E +N +L+VKE Q E+ +ARKE ++ L DM G R+ +G+KRMGELD K F
Sbjct: 448 VDNLENMEAMNQTLIVKERQSNDELQEARKELINGLDDMLNGPRTNIGLKRMGELDQKIF 507
Query: 60 QTFCSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNGIPQ 105
C +++ E+ +LCS W+EN+K+SAWHPFK + V+ P+
Sbjct: 508 VNNCKKRFPLEEAGTKGVELCSLWQENVKNSAWHPFKVVTVDDKPE 553
>Glyma08g23240.1
Length = 629
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 1 MEQLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRG-RSQLGIKRMGELDPKPF 59
++ LE +E +N +L+VKE Q E+ +ARKE ++ L DM G R+ +G+KRMGELD K F
Sbjct: 448 VDNLENMEAMNQTLIVKERQSNDELQEARKELINGLDDMLNGPRTNIGLKRMGELDQKIF 507
Query: 60 QTFCSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNGIPQ 105
C +++ E+ +LCS W+EN+K+SAWHPFK + V+ P+
Sbjct: 508 VNNCKKRFPLEEAGTKGVELCSLWQENVKNSAWHPFKVVTVDDKPE 553
>Glyma07g02740.2
Length = 629
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 1 MEQLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRG-RSQLGIKRMGELDPKPF 59
++ LE +E +N +L+VKE Q E+ +ARKE + L DM R+++G+KRMGELD K F
Sbjct: 448 VDNLENMEAMNQTLIVKERQSNDELQEARKELIKGLDDMLNAPRTKIGLKRMGELDQKVF 507
Query: 60 QTFCSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVN 101
C +++ E+ +LCS W+EN+K+SAWHPFK + V+
Sbjct: 508 VNNCKKRFPLEEAGTKGVELCSLWQENVKNSAWHPFKVVTVD 549
>Glyma07g02740.1
Length = 629
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 1 MEQLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRG-RSQLGIKRMGELDPKPF 59
++ LE +E +N +L+VKE Q E+ +ARKE + L DM R+++G+KRMGELD K F
Sbjct: 448 VDNLENMEAMNQTLIVKERQSNDELQEARKELIKGLDDMLNAPRTKIGLKRMGELDQKVF 507
Query: 60 QTFCSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVN 101
C +++ E+ +LCS W+EN+K+SAWHPFK + V+
Sbjct: 508 VNNCKKRFPLEEAGTKGVELCSLWQENVKNSAWHPFKVVTVD 549
>Glyma02g41580.1
Length = 899
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 2 EQLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQT 61
+ L +++LN +L++KE Q E+ +ARKE ++ +K++ R+ +G+KRMGELD +PF
Sbjct: 719 QSLRDLDSLNQTLIIKERQSNDELQEARKELINGIKEI-SCRANVGVKRMGELDIRPFLE 777
Query: 62 FCSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
KY+ E +D +++LCS WEE ++D WHPFK + G
Sbjct: 778 AMKIKYNNEDAEDRASELCSLWEEYIRDPDWHPFKITIIEG 818
>Glyma11g34010.3
Length = 640
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 4 LELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFC 63
L+ ++ LN +L++KE + E+ +AR+ +D++K++ + + +KRMGELD +PF
Sbjct: 462 LQDLDALNQTLIIKERESNDELQEARQALVDAIKEL-QSHGNIRLKRMGELDTRPFLEAM 520
Query: 64 SQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
Q+Y+ E ++ +++LCS WEE LKD WHPFK I V G
Sbjct: 521 KQRYNEEDAEERASELCSLWEEYLKDPDWHPFKVIMVEG 559
>Glyma11g34010.2
Length = 640
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 4 LELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFC 63
L+ ++ LN +L++KE + E+ +AR+ +D++K++ + + +KRMGELD +PF
Sbjct: 462 LQDLDALNQTLIIKERESNDELQEARQALVDAIKEL-QSHGNIRLKRMGELDTRPFLEAM 520
Query: 64 SQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
Q+Y+ E ++ +++LCS WEE LKD WHPFK I V G
Sbjct: 521 KQRYNEEDAEERASELCSLWEEYLKDPDWHPFKVIMVEG 559
>Glyma11g34010.1
Length = 640
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 4 LELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFC 63
L+ ++ LN +L++KE + E+ +AR+ +D++K++ + + +KRMGELD +PF
Sbjct: 462 LQDLDALNQTLIIKERESNDELQEARQALVDAIKEL-QSHGNIRLKRMGELDTRPFLEAM 520
Query: 64 SQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
Q+Y+ E ++ +++LCS WEE LKD WHPFK I V G
Sbjct: 521 KQRYNEEDAEERASELCSLWEEYLKDPDWHPFKVIMVEG 559
>Glyma18g04320.1
Length = 657
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 4 LELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFC 63
L+ ++ LN +L++KE + E+ +AR+ +D++K++ + + +KRMGELD +PF
Sbjct: 479 LQDLDALNQTLIIKERESNDELQEARQALVDAIKEL-QSHGNIRLKRMGELDTRPFLEAM 537
Query: 64 SQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
Q+Y+ E ++ +++LCS WEE LKD WHPFK I V G
Sbjct: 538 KQRYNEEDAEERASELCSLWEEYLKDPDWHPFKVIMVEG 576
>Glyma04g18690.1
Length = 320
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 4 LELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFC 63
L+ ++ LN +L++K+ + E+ +AR+ +D++K++ + + KRMGELD +PF
Sbjct: 169 LQDLDALNQTLIIKKRESNDELQEARQALVDAIKEL-QSHGNIRFKRMGELDTRPFLEAM 227
Query: 64 SQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
Q+Y+ E ++ +++LCS W+E LKD WHPFK I V G
Sbjct: 228 KQRYNEEDAEERASELCSLWKEYLKDPDWHPFKVIMVEG 266
>Glyma08g36280.1
Length = 641
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 4 LELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFC 63
L+ ++ LN +L++KE + E+ +AR+ +D +K++ + +KRMGELD +PF
Sbjct: 463 LQDLDELNQALIIKERESNDELQEARQALVDGIKEL-SSHGNICLKRMGELDTRPFLEAM 521
Query: 64 SQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
++Y+ E+ ++ +A +CS WEE L++ WHPFK I V G
Sbjct: 522 KKRYNEEEAEERTADMCSLWEELLRNPDWHPFKVIMVEG 560
>Glyma13g41150.1
Length = 640
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 10 LNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFCSQKYSC 69
L +LVVKE + E+ DARKE + L+ R+ +G+KRMGELD KPF + +KYS
Sbjct: 468 LQQALVVKERKTNDELQDARKELIRWLRKTNSSRAFIGVKRMGELDEKPFLSAAKRKYSG 527
Query: 70 EQWQDISAKLCSSWEENLKDSAWHPFKTI 98
++ + +LCS +E L+D W PFK +
Sbjct: 528 DEVNLKAVELCSQYEAYLRDPTWFPFKVL 556
>Glyma15g04250.1
Length = 626
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 13 SLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFCSQKYSCEQW 72
+LVVKE + E+ DARKE + L R+ +G+KRMGELD KPF + +KYS ++
Sbjct: 458 ALVVKERKTNDELQDARKELIRWLGKTNSSRAFIGVKRMGELDGKPFLSAAKRKYSGDEV 517
Query: 73 QDISAKLCSSWEENLKDSAWHPFKTI 98
+ +LCS +E L+D W PFK +
Sbjct: 518 NLKAVELCSQYEAYLRDPNWFPFKVL 543
>Glyma16g17220.1
Length = 347
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 36 LKDMFRG-RSQLGIKRMGELDPKPFQTFCSQKYSCEQWQDISAKLCSSWEENLKDSAWHP 94
L DM R+++G+KRMGELD K F C +++ E+ +LCS W+EN+K+SAWHP
Sbjct: 204 LDDMLNAPRTKIGLKRMGELDHKVFVNNCKKRFPLEEAGTKGVELCSLWQENVKNSAWHP 263
Query: 95 FKTIEVNGIPQV 106
FK + ++ +V
Sbjct: 264 FKVVTIDDKAEV 275
>Glyma15g33630.1
Length = 413
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 2 EQLELVE-NLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQ 60
EQL++++ + N +L K + K E+ DAR++ + L +G +++ IK+ GE+ + F+
Sbjct: 307 EQLKVLKYDENQALKKKVQEAKTELEDARQQIIKELPRFLKGVTKIQIKKFGEVSARSFK 366
Query: 61 TFCSQKY-SCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
C +Y + ++ S KLC+ W++ + DS WHPFK +EV G
Sbjct: 367 KVCMNRYKNNKKASSESVKLCAKWQKEILDSTWHPFKIVEVEG 409
>Glyma15g33680.1
Length = 537
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 12/108 (11%)
Query: 2 EQLELVE-NLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQ 60
EQL+++ + N +L K + K E+ DAR++ + L +G +++ IK++GE+ + F+
Sbjct: 314 EQLKVLRYDENQALKKKVQEAKIELEDARQQIIKELPQFLKGVTKIQIKKIGEVSARSFK 373
Query: 61 TFC------SQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
C ++K S E S KLC+ W++ + DS WHPFK +EV G
Sbjct: 374 KVCMNRNKNNKKASSE-----SVKLCAKWQKEILDSTWHPFKIVEVEG 416
>Glyma15g33600.1
Length = 469
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 11 NSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFCSQKY-SC 69
N +L KE + K E+ DAR++ + +G + IK+ GE+ + F+ C Y +
Sbjct: 272 NQALKKKEQEAKSELEDARQQ-------IIKGLLRFKIKKFGEVSARSFKKVCMNWYKNN 324
Query: 70 EQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
++ S KLC+ W++ + DS WHPFK +EV G
Sbjct: 325 KKTSSESVKLCAKWQKEILDSTWHPFKIVEVEG 357
>Glyma02g06000.1
Length = 414
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 5 ELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFCS 64
+LV+ LN +L+VKE + ++ +ARK +D RMGELD PF
Sbjct: 252 DLVDALNQALIVKERESNDKLQEARKALVD---------------RMGELDTIPFHDAMK 296
Query: 65 QKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNG 102
++Y+ E+ ++ +++LCS WEE LK+ HPFK V G
Sbjct: 297 KRYNEEEAEERASELCSLWEEYLKNPDCHPFKVTMVEG 334
>Glyma15g33660.1
Length = 546
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 SLDSLKDMFRGRSQLGIKRMGELDPKPFQTFCSQKY-SCEQWQDISAKLCSSWEENLKDS 90
++ L +G +++ IK++GE+ + F+ C +Y + ++ S KLC+ W++ + DS
Sbjct: 389 TIQELPQFLKGVTKIQIKKIGEVSARSFKKVCMNRYKNNKKASSESVKLCAKWQKEILDS 448
Query: 91 AWHPFKTIEVNG 102
WHPFK ++V G
Sbjct: 449 TWHPFKIVDVEG 460
>Glyma11g34020.1
Length = 346
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 17/117 (14%)
Query: 7 VENLNSSLVVKEHQYKQEILDARK-----------ESLDSLKD---MFRGRSQLGIKRMG 52
+E N SL++K+H+ E+ RK ++L S D M +G+KRMG
Sbjct: 166 LEEFNQSLIIKQHESNDELQKTRKKLIEVFLFIFLQNLSSAMDIAGMSSHHGNIGVKRMG 225
Query: 53 ELDPKPFQTFCSQK--YSCEQWQDISA-KLCSSWEENLKDSAWHPFKTIEVNGIPQV 106
E+D +P S K Y+ + + A +CS W+++L++ WHPFK I +G +V
Sbjct: 226 EIDIEPVHKALSAKRRYNNKAEAEHRALAMCSLWQKDLEEPNWHPFKIITADGKSKV 282
>Glyma0175s00200.1
Length = 289
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 44 SQLGIKRMGELDPKPFQTFCSQKY-SCEQWQDISAKLCSSWEENLKDSAWHPFKTIE--V 100
+++ IK+ GE+ + F+ C +Y + ++ S KLC+ W + + DS WHPFK +E +
Sbjct: 156 TKIQIKKFGEVSARSFKKVCMNRYKNNKKASSESVKLCAKWHKEILDSTWHPFKIVEEVI 215
Query: 101 NG 102
NG
Sbjct: 216 NG 217
>Glyma18g04290.1
Length = 388
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 44 SQLGIKRMGELDPKPFQTFCS--QKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVN 101
+ +K+MG++D +PF + ++Y+ E+ + I+ + CS W+++L D W+PFK + +
Sbjct: 241 GNIDVKQMGQIDTEPFVKALTGRRRYNKEEAEQIALETCSLWQKDLGDPHWYPFKIVTIG 300
Query: 102 G 102
G
Sbjct: 301 G 301