Miyakogusa Predicted Gene
- Lj0g3v0174489.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0174489.1 tr|G7JDC8|G7JDC8_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_4g023430 PE=4 SV=1,46.75,0.0000000002,no
description,NULL; F-box domain,F-box domain, cyclin-like; A Receptor
for Ubiquitination Targets,F,CUFF.10973.1
(144 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma16g27870.1 55 2e-08
Glyma02g08760.1 51 5e-07
Glyma16g32780.1 50 5e-07
Glyma08g10360.1 50 1e-06
Glyma06g13220.1 49 2e-06
Glyma18g33970.1 48 3e-06
Glyma16g32770.1 48 4e-06
Glyma03g26910.1 47 4e-06
Glyma18g51000.1 47 6e-06
Glyma01g44300.1 47 7e-06
>Glyma16g27870.1
Length = 330
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 28/33 (84%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAA 141
PVKS+VRFK VCKLW SLISDP FA HF++AA
Sbjct: 2 PVKSLVRFKCVCKLWLSLISDPHFAISHFEQAA 34
>Glyma02g08760.1
Length = 300
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAA 141
PVKS+VRFK VC+LW SLISDP FA HF+ A
Sbjct: 25 PVKSLVRFKCVCRLWLSLISDPSFAISHFEPMA 57
>Glyma16g32780.1
Length = 394
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAA 141
PV+SI+RFK +CKLW SLISDP FA HF AA
Sbjct: 36 PVRSILRFKCMCKLWFSLISDPEFARSHFALAA 68
>Glyma08g10360.1
Length = 363
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAA 141
PVKS+VRFK+VCK W LISDP FA HF+ AA
Sbjct: 16 PVKSLVRFKSVCKSWLFLISDPRFAKSHFELAA 48
>Glyma06g13220.1
Length = 376
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQR 139
PVKS+VRFK VCK W L+SDP FA+ HF++
Sbjct: 31 PVKSLVRFKCVCKSWLCLLSDPHFATSHFEQ 61
>Glyma18g33970.1
Length = 283
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAP 142
PVK +++FK VCK W SL+SDP F LH ++AP
Sbjct: 7 PVKPLIQFKCVCKGWNSLMSDPYFIKLHLSKSAP 40
>Glyma16g32770.1
Length = 351
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAA 141
PV+SI+RFK +CKLW SLIS P FA HF AA
Sbjct: 14 PVRSILRFKCMCKLWFSLISHPEFARSHFALAA 46
>Glyma03g26910.1
Length = 355
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRA-APS 143
PV+S++RFK VCK W S+ISDP FA HF+ A AP+
Sbjct: 25 PVRSVLRFKCVCKSWLSVISDPHFAKSHFELAIAPT 60
>Glyma18g51000.1
Length = 388
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQ--RAAPS 143
PVKS+ RFK VCK W SLISDP F HF AAPS
Sbjct: 21 PVKSVTRFKCVCKSWLSLISDPQFGFSHFDLALAAPS 57
>Glyma01g44300.1
Length = 315
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 109 PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAA 141
PV+SI+RFK +CK W SLISDP FA HF AA
Sbjct: 25 PVRSILRFKCMCKSWFSLISDPEFARSHFALAA 57