Miyakogusa Predicted Gene

Lj0g3v0170779.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0170779.1 tr|D1GEF6|D1GEF6_BRARP Disease resistance protein
OS=Brassica rapa subsp. pekinensis PE=4
SV=1,34.22,3e-17,seg,NULL,CUFF.10707.1
         (219 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g17690.1                                                       105   3e-23
Glyma16g09250.1                                                        91   1e-18
Glyma18g14970.1                                                        81   8e-16
Glyma18g25790.1                                                        74   9e-14
Glyma16g17030.1                                                        70   2e-12
Glyma03g29220.1                                                        60   1e-09

>Glyma16g17690.1 
          Length = 3826

 Score =  105 bits (263), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 27  LRPYHNVKLSYRSKESVFLGYSSSHKGYKCLDSSGRIFISKDVLFNETRFPFSELFPSAD 86
           LRPY+  KL +RS E +FLGYS+SHKGYK L  SG++FISKDV+FNE+RFP++ELF S+ 
Sbjct: 689 LRPYNKHKLDFRSHECLFLGYSTSHKGYKYLSPSGKLFISKDVIFNESRFPYTELFESST 748

Query: 87  TETHITPVS-SVIPLVXXXXXXXXXXXXXXXXXXXXXXHIATPSPTELEAPATNSGDNTT 145
                + VS + IP+V                       +A+   + + +   NS  +  
Sbjct: 749 ISPSTSLVSLNPIPIVVPSQVSSPINPINP---------VASVEASPITSVEPNSVASVD 799

Query: 146 SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIVYPHNTHTMTTRAKSGIVKPRLFPTLL 205
                                          R V   N H M TR+KSGI +PRL P  L
Sbjct: 800 DQSSSSVESQHPPSLPLSKTSPQTSETTSPPRTV---NVHPMQTRSKSGIYQPRLHPIAL 856

Query: 206 LTQAAEP 212
           + +  +P
Sbjct: 857 VPKVPDP 863


>Glyma16g09250.1 
          Length = 1460

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 3/73 (4%)

Query: 10  NNLLIVNFLKYLAVPG--ILRPYHNVKLSYRSKESVFLGYSSSHKGYKCLDS-SGRIFIS 66
           NN+   NFL+        +L PY+N K  YRSKE +FLGYS+SH+GYKCLD+ SGRI+IS
Sbjct: 751 NNVPDYNFLRAFGCACYPLLTPYNNPKFQYRSKECIFLGYSTSHRGYKCLDNKSGRIYIS 810

Query: 67  KDVLFNETRFPFS 79
           KDVLFNE  FP+ 
Sbjct: 811 KDVLFNEKHFPYQ 823


>Glyma18g14970.1 
          Length = 2061

 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 23  VPGILRPYHNVKLSYRSKESVFLGYSSSHKGYKCLDSSGRIFISKDVLFNETRFPF 78
           V    RPY+  KL +RS+E +FLGYS +HKGYKCL + G I+ISKDV+FNE++FP+
Sbjct: 686 VDAYTRPYNQNKLQFRSQECIFLGYSPAHKGYKCLSAEGIIYISKDVVFNESKFPY 741


>Glyma18g25790.1 
          Length = 469

 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 38/49 (77%)

Query: 34 KLSYRSKESVFLGYSSSHKGYKCLDSSGRIFISKDVLFNETRFPFSELF 82
          KL + S E +FLGYS+SHKGYK L  SGR  ISKDV+FNE RFP+ ELF
Sbjct: 14 KLEFWSHECIFLGYSTSHKGYKSLSPSGRSLISKDVVFNELRFPYKELF 62


>Glyma16g17030.1 
          Length = 982

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 38  RSKESVFLGYSSSHKGYKCLDSSGRIFISKDVLFNETRFPFSELF 82
           +S E VFLGYS SHKGYKCL SSG+IFISKD +FNE + P+  LF
Sbjct: 511 KSSECVFLGYSLSHKGYKCLFSSGKIFISKDAIFNENQSPYPTLF 555


>Glyma03g29220.1 
          Length = 952

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 26  ILRPYHNVKLSYRSKESVFLGYSSSHKGYKCLDSSGRIFISKDVLFNETRFPFSELFP 83
           +L+PYH  KL +RS+E VFLGY SSHKGYKCL S+  I ++  +LF      F +  P
Sbjct: 492 LLKPYHTHKLDFRSQECVFLGYYSSHKGYKCLSSTASI-LTYLLLFQPLNLHFPKYLP 548