Miyakogusa Predicted Gene

Lj0g3v0169939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0169939.1 tr|B9H7E5|B9H7E5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_209887
PE=4,39.38,7e-17, ,CUFF.10655.1
         (157 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g03270.1                                                       182   2e-46
Glyma13g03270.4                                                       181   2e-46
Glyma14g23650.1                                                       165   2e-41

>Glyma13g03270.1 
          Length = 438

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 118/160 (73%), Gaps = 6/160 (3%)

Query: 2   YSAALQLDPNNGFVKENMKAAVAKLLDEQQHGDPNQYPRSSEEFQNQSARG-PRSHGVPP 60
           +  ALQLDPNN  VKEN++ A  KLL+EQ     NQ  RSS+EF NQSA+G  RSH VPP
Sbjct: 281 FRKALQLDPNNESVKENIRVAERKLLEEQHRAYQNQNSRSSQEFPNQSAQGGSRSHSVPP 340

Query: 61  PFTSMPFNPNNLASMFMNMAPNATNAH-QGPHP-QER-EDANTSGADEPEIRAGSSNFSM 117
           PF+SM FNP ++ASMFMN+  N TNA  QG H  QER ED+N SG  EPEIR G  N S+
Sbjct: 341 PFSSMSFNPRDIASMFMNIT-NPTNAQPQGSHSHQERQEDSNGSGTSEPEIRIGG-NISV 398

Query: 118 NFEQIPQDLSGAFQSMMEMFSGSVPPGQPHDQTNGRTAPN 157
           N E +P+D++GA QSMMEM SG+ PPGQP DQTNGRTAPN
Sbjct: 399 NMEDMPEDITGALQSMMEMLSGAAPPGQPQDQTNGRTAPN 438


>Glyma13g03270.4 
          Length = 435

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 118/160 (73%), Gaps = 6/160 (3%)

Query: 2   YSAALQLDPNNGFVKENMKAAVAKLLDEQQHGDPNQYPRSSEEFQNQSARG-PRSHGVPP 60
           +  ALQLDPNN  VKEN++ A  KLL+EQ     NQ  RSS+EF NQSA+G  RSH VPP
Sbjct: 278 FRKALQLDPNNESVKENIRVAERKLLEEQHRAYQNQNSRSSQEFPNQSAQGGSRSHSVPP 337

Query: 61  PFTSMPFNPNNLASMFMNMAPNATNAH-QGPHP-QER-EDANTSGADEPEIRAGSSNFSM 117
           PF+SM FNP ++ASMFMN+  N TNA  QG H  QER ED+N SG  EPEIR G  N S+
Sbjct: 338 PFSSMSFNPRDIASMFMNIT-NPTNAQPQGSHSHQERQEDSNGSGTSEPEIRIGG-NISV 395

Query: 118 NFEQIPQDLSGAFQSMMEMFSGSVPPGQPHDQTNGRTAPN 157
           N E +P+D++GA QSMMEM SG+ PPGQP DQTNGRTAPN
Sbjct: 396 NMEDMPEDITGALQSMMEMLSGAAPPGQPQDQTNGRTAPN 435


>Glyma14g23650.1 
          Length = 269

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/163 (60%), Positives = 114/163 (69%), Gaps = 9/163 (5%)

Query: 2   YSAALQLDPNNGFVKENMKAAVAKLLDEQQHGDPNQYPRSSEE-----FQNQSARGPRSH 56
           +  ALQLDPNN  VKEN++ A  KLL+EQ    PNQ    S+          S+RG RSH
Sbjct: 109 FRKALQLDPNNESVKENIRVAERKLLEEQHRAYPNQLLLHSKMPASIFASPSSSRGSRSH 168

Query: 57  GVPPPFTSMPFNPNNLASMFMNMAPNATNAHQ-GPHPQER-EDANTSGADEPEIRAGSSN 114
           G PPPF+SMPFNP ++ASMFMN   NATNA Q G H QER ED+N SGA EPEIR G  N
Sbjct: 169 GEPPPFSSMPFNPRDIASMFMNFT-NATNAQQQGSHSQERQEDSNGSGASEPEIRIGG-N 226

Query: 115 FSMNFEQIPQDLSGAFQSMMEMFSGSVPPGQPHDQTNGRTAPN 157
            S+N E +P+D++GAFQSMMEM SG+ PPGQP DQ NGR APN
Sbjct: 227 ISVNMEDMPEDITGAFQSMMEMLSGAAPPGQPQDQMNGRAAPN 269