Miyakogusa Predicted Gene

Lj0g3v0168359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0168359.1 tr|B9I614|B9I614_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241858
PE=4,63.24,3e-18,dsRNA-binding domain-like,NULL;
DS_RBD,Double-stranded RNA-binding; Double-stranded RNA binding
moti,CUFF.10551.1
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g10870.1                                                       115   3e-26
Glyma19g42970.1                                                        61   6e-10
Glyma12g29420.1                                                        60   1e-09
Glyma11g20530.1                                                        60   1e-09
Glyma12g08070.1                                                        59   2e-09
Glyma08g42580.1                                                        59   3e-09
Glyma13g40070.1                                                        58   4e-09
Glyma06g34600.1                                                        57   9e-09
Glyma06g10200.2                                                        53   1e-07
Glyma06g10200.1                                                        53   2e-07
Glyma04g10230.1                                                        53   2e-07
Glyma18g50130.1                                                        52   4e-07
Glyma14g07600.1                                                        51   5e-07

>Glyma05g10870.1 
          Length = 140

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 59/69 (85%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYKT+LQ LCQ+ SW+LP Y+ SREGPDHNPRF+STV VNGV F + SP+ SAK AQNDA
Sbjct: 1  MYKTRLQELCQRRSWTLPTYDNSREGPDHNPRFTSTVNVNGVSFHTPSPTRSAKQAQNDA 60

Query: 61 AMLAFIHFS 69
          AMLAF+HFS
Sbjct: 61 AMLAFLHFS 69


>Glyma19g42970.1 
          Length = 527

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF +TV  NG  F S +   + + A++ A
Sbjct: 1  MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60

Query: 61 AMLAF 65
          A +A 
Sbjct: 61 AEVAL 65



 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 1   MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
           +YK  LQ    +   +LP Y T R GP H P FS +V + G+ F +  PS + K AQ +A
Sbjct: 87  VYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFSCSVEIAGMHF-TGDPSRTKKQAQKNA 145

Query: 61  AMLAF 65
           AM A+
Sbjct: 146 AMAAW 150


>Glyma12g29420.1 
          Length = 411

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF +TV  NG  F S     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61 AMLAFIHFSQ 70
          A +A    S 
Sbjct: 61 AEVALNSLSH 70


>Glyma11g20530.1 
          Length = 411

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF +TV  NG  F S     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61 AMLAFIHFS 69
          A +A    S
Sbjct: 61 AEVALNSLS 69


>Glyma12g08070.1 
          Length = 401

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF +TV  NG  F S     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61 AMLAFIHFS 69
          A +A    S
Sbjct: 61 AEVALNSLS 69


>Glyma08g42580.1 
          Length = 319

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 31/48 (64%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSAS 48
          MYK KLQ LC +  W LP Y   ++GPDH P F ++V VN V F+S +
Sbjct: 1  MYKAKLQELCHQRKWGLPRYSAMKDGPDHMPSFKASVYVNRVTFTSGA 48


>Glyma13g40070.1 
          Length = 479

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF +TV  NG  F +     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60

Query: 61 AMLAF 65
          A  A 
Sbjct: 61 AEAAL 65


>Glyma06g34600.1 
          Length = 150

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y + REGP+H PRF +T+  NG  F +     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60

Query: 61 A 61
          A
Sbjct: 61 A 61


>Glyma06g10200.2 
          Length = 359

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          ++K++LQ   QK     P YET +EGP H P F STV VN V + S     + K A+  A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74

Query: 61 AMLAFIHF 68
          A +A +  
Sbjct: 75 AEVALVEL 82


>Glyma06g10200.1 
          Length = 363

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          ++K++LQ   QK     P YET +EGP H P F STV VN V + S     + K A+  A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74

Query: 61 AMLAFIHF 68
          A +A +  
Sbjct: 75 AEVALVEL 82


>Glyma04g10230.1 
          Length = 359

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          ++K++LQ   QK     P YET +EGP H P F STV VN V + S     + K A+  A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74

Query: 61 AMLAFIHF 68
          A +A +  
Sbjct: 75 AEVALVEL 82


>Glyma18g50130.1 
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 2  YKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAA 61
          YKT+LQ   QK + SLP Y    EG  H+P+F STV V+G+ ++S +     + A+ D A
Sbjct: 10 YKTRLQSFTQKCNISLPMYINVNEGRQHDPKFRSTVWVDGMKYTSPNTFSRLRAAEADVA 69

Query: 62 MLAF 65
           +A 
Sbjct: 70 RMAL 73


>Glyma14g07600.1 
          Length = 459

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ    K+  + P Y+T  EG DH+P+F STV V  + ++S S     K A+++A
Sbjct: 26 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 85

Query: 61 AMLAF 65
          A LA 
Sbjct: 86 ARLAL 90