Miyakogusa Predicted Gene

Lj0g3v0167619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0167619.1 Non Chatacterized Hit- tr|F6HVA5|F6HVA5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,63.3,0,no
description,NULL; DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2,NULL;
DNA-DIRECTED RNA POLYMERASE I S,gene.g12858.t1.1
         (287 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g14980.1                                                       385   e-107
Glyma01g00980.1                                                       368   e-102
Glyma09g07570.1                                                       122   4e-28
Glyma15g18790.1                                                       120   2e-27
Glyma15g08000.1                                                        78   1e-14

>Glyma07g14980.1 
          Length = 709

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/321 (66%), Positives = 218/321 (67%), Gaps = 90/321 (28%)

Query: 1   MERKGMTQVLQRLSFIGFLGQMTRVSPQFEKSRKVSGPRALQPSQ----VSCN-PVGEAC 55
           MERKGMTQVLQRLSFIG LG MTRVSPQFEKSRKVSGPRALQPSQ      C+ P GE+C
Sbjct: 90  MERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESC 149

Query: 56  GLVKNLALMTHVTTDEEEAPLISLISGAKSITNLTDLYNQLLGLRRSPEQILFLGVWRGG 115
           GLVKNLALMTHVTTDEEE PLISL                                    
Sbjct: 150 GLVKNLALMTHVTTDEEEKPLISL------------------------------------ 173

Query: 116 GCYYLGVEDMEYLSGEELHTPDSFLVIFNGLILGKHRRPRGFVTAMRKLRRAGKIGEFVS 175
            C  LGVEDM+ LS EELHTPDSFLVIFNGLILGKHRRP  F TA+RKLRRAGKIGEFVS
Sbjct: 174 -CESLGVEDMKDLSAEELHTPDSFLVIFNGLILGKHRRPLHFATAIRKLRRAGKIGEFVS 232

Query: 176 VYVNEKQ-----------------------------------DGVRTFDDFLRDGLIEYL 200
           VYVNEKQ                                   DGVRTFDDFLRDGL+EYL
Sbjct: 233 VYVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLLEYL 292

Query: 201 DVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQVVSQSLP 260
           DVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ       
Sbjct: 293 DVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ------- 345

Query: 261 SLFLYKCAMGKQAMGNIAYNQ 281
                 CAMGKQAMGNIA+NQ
Sbjct: 346 ------CAMGKQAMGNIAFNQ 360


>Glyma01g00980.1 
          Length = 795

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/321 (63%), Positives = 213/321 (66%), Gaps = 90/321 (28%)

Query: 1   MERKGMTQVLQRLSFIGFLGQMTRVSPQFEKSRKVSGPRALQPSQ----VSCN-PVGEAC 55
           MERKGMTQVLQRLSFIG LG MTRVSPQFEKSRKVSGPRALQPSQ      C+ P GE+C
Sbjct: 86  MERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESC 145

Query: 56  GLVKNLALMTHVTTDEEEAPLISLISGAKSITNLTDLYNQLLGLRRSPEQILFLGVWRGG 115
           GLVKNLALMTHVTTDEEE PLISL                                    
Sbjct: 146 GLVKNLALMTHVTTDEEEKPLISLF----------------------------------- 170

Query: 116 GCYYLGVEDMEYLSGEELHTPDSFLVIFNGLILGKHRRPRGFVTAMRKLRRAGKIGEFVS 175
             Y L V  +E+L  EELHTPDSFLVIFNGLILGKHRRP  F T +RKLRRAG+IGEFVS
Sbjct: 171 --YSLDVARIEHLFAEELHTPDSFLVIFNGLILGKHRRPLHFATRIRKLRRAGEIGEFVS 228

Query: 176 VYVNEKQ-----------------------------------DGVRTFDDFLRDGLIEYL 200
           VYVNEKQ                                   DGV TFDDFLRDGL+EYL
Sbjct: 229 VYVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVCTFDDFLRDGLLEYL 288

Query: 201 DVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQVVSQSLP 260
           DVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ       
Sbjct: 289 DVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ------- 341

Query: 261 SLFLYKCAMGKQAMGNIAYNQ 281
                 CAMGKQAMGNIA+NQ
Sbjct: 342 ------CAMGKQAMGNIAFNQ 356


>Glyma09g07570.1 
          Length = 1192

 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 135/328 (41%), Gaps = 107/328 (32%)

Query: 3   RKGMTQVLQRLSFIGFLGQMTRVSPQFEKSRKVSGPRALQPSQ--VSC---NPVGEACGL 57
           R G++QVL RL++   L  + R++    +  K++ PR L  SQ  + C    P G+ACGL
Sbjct: 469 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 528

Query: 58  VKNLALMTHVTTDEEEAPLISLISGAKSITNLTDLYNQLLGLRRSPEQILFLGVWRGGGC 117
           VKNLALM ++T      P++                              FL  W     
Sbjct: 529 VKNLALMVYITVGSAAYPILE-----------------------------FLEEW----- 554

Query: 118 YYLGVEDMEYLSGEELHTPDSFLVIFNGLILGKHRRPRGFVTAMRKLRRAGKIGEFVSVY 177
              G E+ E +S   +  P +  +  NG  +G HR P   V  ++KLRR   +   V V 
Sbjct: 555 ---GTENFEEISPAVI--PQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVV 609

Query: 178 VNEKQDGVRTFDDFLR---------------------------------------DGLIE 198
            + +   +R + D+ R                                        G IE
Sbjct: 610 RDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIE 669

Query: 199 YLDVNEENNALIALY----------EGDATSET-THIEIEPFTILGVIAGLIPYPHHNQS 247
           Y+D  EE   +I++             DA S+T TH EI P  ILGV A +IP+P HNQS
Sbjct: 670 YIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQS 729

Query: 248 PRNTYQVVSQSLPSLFLYKCAMGKQAMG 275
           PRNTYQ              AMGKQAMG
Sbjct: 730 PRNTYQ-------------SAMGKQAMG 744


>Glyma15g18790.1 
          Length = 1193

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 133/330 (40%), Gaps = 111/330 (33%)

Query: 3   RKGMTQVLQRLSFIGFLGQMTRVSPQFEKSRKVSGPRALQPSQ--VSC---NPVGEACGL 57
           R G++QVL RL++   L  + R++    +  K++ PR L  SQ  + C    P G+ACGL
Sbjct: 469 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 528

Query: 58  VKNLALMTHVTTDEEEAPLISLISGAKSITNLTDLYNQLLGLRRSPEQILFLGVWRGGGC 117
           VKNLALM ++T      P++                              FL  W     
Sbjct: 529 VKNLALMVYITVGSAAYPILE-----------------------------FLEEW----- 554

Query: 118 YYLGVEDMEYLSGEELHTPDSFLVIFNGLILGKHRRPRGFVTAMRKLRRAGKIGEFVSV- 176
              G E+ E +S   +  P +  +  NG  +G HR P   V  +RKLRR   +   V V 
Sbjct: 555 ---GTENFEEISPAVI--PQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVV 609

Query: 177 ---------------------YVNEKQ-------------------DGVRTFDDFLRDGL 196
                                ++ +KQ                   DG   + D +  G 
Sbjct: 610 RDIILKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDG--GWHDLVSKGF 667

Query: 197 IEYLDVNEENNALIALYEGDATSET-----------THIEIEPFTILGVIAGLIPYPHHN 245
           IEY+D  EE   +I++   D                TH EI P  ILGV A +IP+P HN
Sbjct: 668 IEYIDTEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHN 727

Query: 246 QSPRNTYQVVSQSLPSLFLYKCAMGKQAMG 275
           QSPRNTYQ              AMGKQAMG
Sbjct: 728 QSPRNTYQ-------------SAMGKQAMG 744


>Glyma15g08000.1 
          Length = 1070

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 116/309 (37%), Gaps = 114/309 (36%)

Query: 9   VLQRLSFIGFLGQMTRVSPQFEKSRKVSGPRALQPSQ--VSC---NPVGEACGLVKNLAL 63
           VL RL++   L  + R++       K++ PR L  SQ  + C    P G+ACGL+KNLAL
Sbjct: 452 VLNRLTYASTLSHLRRLNSPIGSEEKLAKPRQLHNSQWGMICPAETPEGQACGLMKNLAL 511

Query: 64  MTHVTTDEEEAPLISLISGAKSITNLTDLYNQLLGLRRSPEQILFLGVWRGGGCYYLGVE 123
           M  +T    E P++ L++              +L    SP  I                 
Sbjct: 512 MVCITVGSAENPILELMA--------------ILHKEISPAVI----------------- 540

Query: 124 DMEYLSGEELHTPDSFLVIFNGLILGKHRRPRGFVTAMRKLRR--------------AGK 169
                       P +  V  NG  +G HR P   VT +R+LRR                K
Sbjct: 541 ------------PQATKVFVNGCWMGIHRDPDKLVTTLRELRRRFMLILKLGLSEISVLK 588

Query: 170 IGEFV------------------------SVYVNEKQDGVRTFDDF-------------- 191
              +V                        S ++ +KQ  ++   D               
Sbjct: 589 SCAYVQIMEGRVQFKPQNICTRSLWSLQSSFFIVDKQRLLKKKKDINALKQEYPEEGGWY 648

Query: 192 --LRDGLIEYLDVNEENNALIALYEGD----------ATSET-THIEIEPFTILGVIAGL 238
             +  GLIEY+D  EE   +I++   D          A S+T TH EI P  ILGV A  
Sbjct: 649 ALMSKGLIEYID-TEEETTMISMTISDLVQARINPEEAFSDTYTHCEIHPSLILGVCASN 707

Query: 239 IPYPHHNQS 247
           IP+P HNQS
Sbjct: 708 IPFPDHNQS 716