Miyakogusa Predicted Gene

Lj0g3v0166159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0166159.1 tr|I1JIP3|I1JIP3_SOYBN KRR1 small subunit
processome component OS=Glycine max PE=3 SV=1,87.13,0,HIV-1 REV
BINDING PROTEIN 2, 3,Ribosomal RNA assembly KRR1; no description,NULL;
Eukaryotic type KH-,NODE_55418_length_1398_cov_52.560085.path2.1
         (280 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g44060.1                                                       430   e-120
Glyma14g05010.1                                                       428   e-120
Glyma03g07940.1                                                        92   7e-19
Glyma16g07610.1                                                        64   1e-10

>Glyma02g44060.1 
          Length = 389

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/272 (76%), Positives = 225/272 (82%), Gaps = 2/272 (0%)

Query: 8   NGATNE--APKENTKRXXXXXXXXXXXXXXNIDRWKVEKFDPSWNEGGMVEVSSFSTLFP 65
           NG  NE  A ++  KR              NID WK+EKFDPSWN+GGM+EVSSFSTLFP
Sbjct: 9   NGVANESQALEQKEKRKGKHDKPKPWDDDPNIDHWKIEKFDPSWNDGGMLEVSSFSTLFP 68

Query: 66  QYREKYLQEAWPLVKSSLKEFGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSR 125
           QYREKYLQEAWP+VKS+LKEFGV+CELNLVEGSMTVSTTRKTRDPYII+KARDLIKLLSR
Sbjct: 69  QYREKYLQEAWPMVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSR 128

Query: 126 SVPAPQAIKILDDEVQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 185
           S+PAPQAIKILDDE+QCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV
Sbjct: 129 SLPAPQAIKILDDEMQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 188

Query: 186 QGNTVSAMGSFKGLKQVRRIVEECMLNKLHPVYNIKILMMKKELEKDPALAQENWDRFLP 245
           QGNTV+AMGSFKGLKQVRRIVEECMLNK+HPVYNIK+LMMKKELEKDPALAQENWDRFLP
Sbjct: 189 QGNTVAAMGSFKGLKQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLP 248

Query: 246 XXXXXXXXXXXXXXXXXXPYTALISPLKLEKM 277
                             PYT    P +  K+
Sbjct: 249 KFKKKNVKQKKVNTKQKKPYTPFPPPQQPSKI 280


>Glyma14g05010.1 
          Length = 389

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/242 (83%), Positives = 216/242 (89%)

Query: 36  NIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGVSCELNLV 95
           NID WK++KFDPSWN+GGM+EVSSFSTLFPQYREKYLQEAWP+VKSSLKEFGV+CELNLV
Sbjct: 39  NIDHWKIDKFDPSWNDGGMLEVSSFSTLFPQYREKYLQEAWPMVKSSLKEFGVACELNLV 98

Query: 96  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKE 155
           EGSMTVSTTRKTRDPYII+KARDLIKLLSRS+PAPQAIKILDDE+QCDIIKISGMVRNKE
Sbjct: 99  EGSMTVSTTRKTRDPYIIIKARDLIKLLSRSIPAPQAIKILDDEMQCDIIKISGMVRNKE 158

Query: 156 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLH 215
           RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV+AMGSFKGLKQVRRIVEECMLNK+H
Sbjct: 159 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMLNKMH 218

Query: 216 PVYNIKILMMKKELEKDPALAQENWDRFLPXXXXXXXXXXXXXXXXXXPYTALISPLKLE 275
           PVYNIK+LMMKKELEKDPALAQENWDRFLP                  PYT    P +  
Sbjct: 219 PVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKVNTKQKKPYTPFPPPQQPS 278

Query: 276 KM 277
           K+
Sbjct: 279 KI 280


>Glyma03g07940.1 
          Length = 68

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 51/67 (76%), Gaps = 12/67 (17%)

Query: 187 GNTVSAMGSFKGLKQVRRIVEECMLNKL------------HPVYNIKILMMKKELEKDPA 234
           GNTV+AMGSFKGLKQVRRIVEECMLNKL            H   + ++LMMKKELEKDPA
Sbjct: 1   GNTVAAMGSFKGLKQVRRIVEECMLNKLPLWCRFWPKKICHFFSHCQVLMMKKELEKDPA 60

Query: 235 LAQENWD 241
           LAQENWD
Sbjct: 61  LAQENWD 67


>Glyma16g07610.1 
          Length = 50

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 35/48 (72%)

Query: 77  PLVKSSLKEFGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLS 124
           PLV     +F   C+   VEGSMTVSTTRKTRDPYII+K RDL KLLS
Sbjct: 1   PLVSIQNPKFAFDCDNAQVEGSMTVSTTRKTRDPYIIIKTRDLTKLLS 48