Miyakogusa Predicted Gene

Lj0g3v0165929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165929.1 Non Chatacterized Hit- tr|J3LLB6|J3LLB6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G1,43.75,2e-18,coiled-coil,NULL; seg,NULL; Remorin_C,Remorin,
C-terminal,CUFF.10399.1
         (317 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g03300.1                                                       188   7e-48
Glyma07g35320.1                                                       131   8e-31
Glyma01g06810.1                                                       127   2e-29
Glyma02g12730.1                                                       125   7e-29
Glyma06g21510.1                                                        56   6e-08

>Glyma20g03300.1 
          Length = 339

 Score =  188 bits (477), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 128/257 (49%), Positives = 155/257 (60%), Gaps = 41/257 (15%)

Query: 64  SGSFKTTDDQGSYKVPISPAT-EQKKPEKTFTPAPSMKKALTFSEKFQST--DKKPETSV 120
           +GSFK  +DQ      I+ AT + K+PEKT TP PS     +F EK +S+   KKPE   
Sbjct: 121 AGSFKPPNDQ------INNATMDLKRPEKTMTP-PS-----SFGEKVKSSTDGKKPEIQA 168

Query: 121 PKKTPSFSDQHLMNTDDIXXXXXXXXXXXXFSDPYLMDTDDIKPEAETPKPEVPRWSMXX 180
           PK+ P+F D+ L+NT +I               P  +    + P      P  P      
Sbjct: 169 PKRIPTFGDEDLVNTGEIK--------------PETLQLPRVPPPVHQQMPLKPSPPRPP 214

Query: 181 XXXXXIRQTSTPARVPPTGQTLPRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEKR 240
                IR TS             RPG +E KADAW REEL+ IKE YEKLLETIDSWEKR
Sbjct: 215 SPPPPIRPTSA------------RPGANETKADAWEREELEKIKESYEKLLETIDSWEKR 262

Query: 241 KRMKARRKLNKHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKEK 300
           K+ KA RKLNKH+ S++ERKRAK ++ YQDKM YI +IAGGARAQ+ ER RNE L+AKEK
Sbjct: 263 KKAKAIRKLNKHQHSESERKRAKVLKNYQDKMNYISQIAGGARAQAEERRRNEVLKAKEK 322

Query: 301 ANKIRTTGKLPGVCSCF 317
           AN IRTTGK+PG CSCF
Sbjct: 323 ANIIRTTGKIPGPCSCF 339


>Glyma07g35320.1 
          Length = 91

 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 80/91 (87%)

Query: 227 YEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQS 286
           YEKLLETIDSWEKRK+ KA RKLNKH+ S++ERKRAK ++KYQDKM YI +IAGGARAQ+
Sbjct: 1   YEKLLETIDSWEKRKKAKAIRKLNKHQHSESERKRAKVLKKYQDKMSYISQIAGGARAQA 60

Query: 287 HERLRNEELRAKEKANKIRTTGKLPGVCSCF 317
            ER R+E L+AKEKAN IRTTGK+PG CSCF
Sbjct: 61  EERRRSEVLKAKEKANIIRTTGKIPGPCSCF 91


>Glyma01g06810.1 
          Length = 266

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 95/138 (68%), Gaps = 7/138 (5%)

Query: 186 IRQTSTPARVPPTGQTLP----RPGTSE--AKADAWLREELKNIKERYEKLLETIDSWEK 239
           +R++ST +   P   T P    +P  +E   KAD W R E + I++RY+KL E IDSWE 
Sbjct: 128 MRKSSTFSDEKPETSTKPAPVRQPTVTERHTKADEWERAEFQEIRQRYDKLREVIDSWEN 187

Query: 240 RKRMKARRKLNKHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKE 299
           +K+MKARRKL+K E+   +R R KA+  +Q+K+  ID+IA GAR ++ E  RNEE +AKE
Sbjct: 188 KKKMKARRKLDKEERGVAQR-RMKALEDFQNKITAIDQIADGARTKAEESRRNEEQKAKE 246

Query: 300 KANKIRTTGKLPGVCSCF 317
           KAN I+TTG++PG+C CF
Sbjct: 247 KANAIQTTGEMPGICFCF 264



 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 24/135 (17%)

Query: 2   SRDYDSIEMEHXXXXXXXXXXIISQE--KEMIDPREISMTRTKSKVDAKKPPILSHLGSV 59
           S D+DS +M+H          +  Q+  ++  +  E S+T+ KSKVD  KPPI   L S 
Sbjct: 42  SGDHDSRDMDHAAAVAAAAFAVNLQDVSEQKSETPEASLTKIKSKVDGTKPPI-PLLNSA 100

Query: 60  SKRFSGSFKTTDDQGSYKVPISPATEQKKPEKTFTPAPSMKKALTFSEKFQSTDKKPETS 119
           SKR S SF++ ++QG            KKPE++ TPAPSM+K+ TFS      D+KPETS
Sbjct: 101 SKRLSSSFRSKNEQG------------KKPEESITPAPSMRKSSTFS------DEKPETS 142

Query: 120 ---VPKKTPSFSDQH 131
               P + P+ +++H
Sbjct: 143 TKPAPVRQPTVTERH 157


>Glyma02g12730.1 
          Length = 250

 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 86/130 (66%), Gaps = 1/130 (0%)

Query: 188 QTSTPARVPPTGQTLPRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEKRKRMKARR 247
           +T TPA       T         KAD W R E + I++RY+KL E IDSWE +K+MKARR
Sbjct: 120 ETITPAPSMRKSSTFSDEKPERTKADEWERAEFQEIRQRYDKLREVIDSWENKKKMKARR 179

Query: 248 KLNKHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTT 307
           KL+K E+   +R R KA+  +Q+K+  ID+IA GAR ++ E  RNEE + KEKAN IRTT
Sbjct: 180 KLDKEERGVAQR-RMKALEDFQNKITAIDQIADGARTKAEESRRNEEQKTKEKANVIRTT 238

Query: 308 GKLPGVCSCF 317
           G++PG+C CF
Sbjct: 239 GEMPGICFCF 248



 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 21/118 (17%)

Query: 2   SRDYDSIEMEHXXXXXXXXXXIISQE--KEMIDPREISMTRTKSKVDAKKPPILSHLGSV 59
           S D+DS +M+H          I  Q+  ++  +  E S+T+TKSKVD  KPPI   L S 
Sbjct: 42  SGDHDSRDMDHAAAVAAAAFAINLQDVSEQKSETLEASLTKTKSKVDGPKPPI-PLLNSA 100

Query: 60  SKRFSGSFKTTDDQGSYKVPISPATEQKKPEKTFTPAPSMKKALTFSEKFQSTDKKPE 117
           SKR SGSF++ +DQG            KKPE+T TPAPSM+K+ TFS      D+KPE
Sbjct: 101 SKRLSGSFRSKNDQG------------KKPEETITPAPSMRKSSTFS------DEKPE 140


>Glyma06g21510.1 
          Length = 251

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 72/109 (66%), Gaps = 3/109 (2%)

Query: 211 KADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKRAKAMRKYQD 270
           KA  W + +++ I++RYEK    I +WE  ++++A+ ++++ ++S+ E KRA  M+ Y++
Sbjct: 135 KATLWEKAKIERIQKRYEKTKSKILAWESYRKIQAKMQMDR-KKSEWEHKRAIEMQHYKN 193

Query: 271 KMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKLP--GVCSCF 317
           K+  ID IA GA +Q  +  R +E +AKEKA KIR TG++P     SC+
Sbjct: 194 KIARIDMIAQGAISQLEDHKRKQESKAKEKAKKIRKTGRVPVKSPFSCY 242