Miyakogusa Predicted Gene

Lj0g3v0165759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165759.1 tr|I1J6W0|I1J6W0_SOYBN tRNA-dihydrouridine
synthase OS=Glycine max GN=Gma.11078 PE=3 SV=1,83.02,0,no
description,Aldolase-type TIM barrel; FMN-linked oxidoreductases,NULL;
Dus,tRNA-dihydrouridine sy,CUFF.10390.1
         (324 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g23820.1                                                       564   e-161
Glyma01g23820.3                                                       564   e-161
Glyma08g36840.1                                                       517   e-147
Glyma01g23820.2                                                       490   e-139
Glyma01g15830.1                                                       162   5e-40
Glyma17g18490.1                                                       124   2e-28
Glyma05g20510.1                                                       122   4e-28
Glyma04g00940.1                                                        94   3e-19

>Glyma01g23820.1 
          Length = 348

 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/318 (83%), Positives = 295/318 (92%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           M+YRNK+VLAPMVRVGTLP RLLA QYGAD  YGEEI+DHK+LKC+R+INELIGSTDFVE
Sbjct: 29  MEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKMLKCDRQINELIGSTDFVE 88

Query: 61  KGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGM 120
           KGT++VVFRTCD+EKD VVFQ+GTSDAVRALA AQLVCNDVAA+DINMGCPK+FS+SGGM
Sbjct: 89  KGTKNVVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGM 148

Query: 121 GAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR 180
           GAALLSKPELIHDILTTL+RNL+ PVTCKIRLL   HDTVELA+RIEKTGVSALAVHGR+
Sbjct: 149 GAALLSKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRK 208

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
           V DRPRDPAKW EIADVVSALSIPVIANGDVFEYDDF+RIKSATGASSVMVARGALWNAS
Sbjct: 209 VPDRPRDPAKWNEIADVVSALSIPVIANGDVFEYDDFERIKSATGASSVMVARGALWNAS 268

Query: 241 IFSPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNLGLPEWKAIVKSESSA 300
           +FSPEG+VSYE VKREYIRKC LWDND++STKHTL+EM+  YS L LPE KA++KSES A
Sbjct: 269 MFSPEGKVSYEAVKREYIRKCILWDNDLKSTKHTLKEMIMHYSCLELPEGKAVIKSESMA 328

Query: 301 DLAELYGMGDYYRLVKSG 318
           DLAELYG  +YY+LVK G
Sbjct: 329 DLAELYGQREYYQLVKPG 346


>Glyma01g23820.3 
          Length = 320

 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/318 (83%), Positives = 295/318 (92%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           M+YRNK+VLAPMVRVGTLP RLLA QYGAD  YGEEI+DHK+LKC+R+INELIGSTDFVE
Sbjct: 1   MEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKMLKCDRQINELIGSTDFVE 60

Query: 61  KGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGM 120
           KGT++VVFRTCD+EKD VVFQ+GTSDAVRALA AQLVCNDVAA+DINMGCPK+FS+SGGM
Sbjct: 61  KGTKNVVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGM 120

Query: 121 GAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR 180
           GAALLSKPELIHDILTTL+RNL+ PVTCKIRLL   HDTVELA+RIEKTGVSALAVHGR+
Sbjct: 121 GAALLSKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRK 180

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
           V DRPRDPAKW EIADVVSALSIPVIANGDVFEYDDF+RIKSATGASSVMVARGALWNAS
Sbjct: 181 VPDRPRDPAKWNEIADVVSALSIPVIANGDVFEYDDFERIKSATGASSVMVARGALWNAS 240

Query: 241 IFSPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNLGLPEWKAIVKSESSA 300
           +FSPEG+VSYE VKREYIRKC LWDND++STKHTL+EM+  YS L LPE KA++KSES A
Sbjct: 241 MFSPEGKVSYEAVKREYIRKCILWDNDLKSTKHTLKEMIMHYSCLELPEGKAVIKSESMA 300

Query: 301 DLAELYGMGDYYRLVKSG 318
           DLAELYG  +YY+LVK G
Sbjct: 301 DLAELYGQREYYQLVKPG 318


>Glyma08g36840.1 
          Length = 292

 Score =  517 bits (1331), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/292 (84%), Positives = 267/292 (91%)

Query: 12  MVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVEKGTESVVFRTC 71
           MVRVGTLP RLLA QYGAD  Y EEI+DHK+LKCERRINELIGSTDFVEKGT +VVFRTC
Sbjct: 1   MVRVGTLPFRLLAAQYGADITYCEEIIDHKMLKCERRINELIGSTDFVEKGTNNVVFRTC 60

Query: 72  DQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGMGAALLSKPELI 131
           D+EKDRVVFQ+GTSDAVRAL  AQLVCNDVAA+DINMGCPK+FS+SGGMGAALLSKPELI
Sbjct: 61  DEEKDRVVFQIGTSDAVRALTTAQLVCNDVAAVDINMGCPKSFSVSGGMGAALLSKPELI 120

Query: 132 HDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRRVLDRPRDPAKW 191
           HDILTTLKRNL+ PVTCKIRLL   HDTVELA+RIEKTGVSALAVHGR+V DRPRDPAKW
Sbjct: 121 HDILTTLKRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRKVPDRPRDPAKW 180

Query: 192 AEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNASIFSPEGEVSYE 251
            EIADVVSALSIPVI NGDVFE DD +RIKSATGASSVMVARGALWNAS+FSPEG+VSYE
Sbjct: 181 NEIADVVSALSIPVIENGDVFENDDVERIKSATGASSVMVARGALWNASMFSPEGKVSYE 240

Query: 252 VVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNLGLPEWKAIVKSESSADLA 303
            VKREYIRKC LWDNDI+STKHTL+EM+  YS L LPE KA++KSES ADLA
Sbjct: 241 AVKREYIRKCILWDNDIKSTKHTLKEMIIHYSCLELPEGKAVIKSESMADLA 292


>Glyma01g23820.2 
          Length = 279

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/277 (84%), Positives = 258/277 (93%)

Query: 42  ILKCERRINELIGSTDFVEKGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDV 101
           +LKC+R+INELIGSTDFVEKGT++VVFRTCD+EKD VVFQ+GTSDAVRALA AQLVCNDV
Sbjct: 1   MLKCDRQINELIGSTDFVEKGTKNVVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDV 60

Query: 102 AAIDINMGCPKAFSLSGGMGAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVE 161
           AA+DINMGCPK+FS+SGGMGAALLSKPELIHDILTTL+RNL+ PVTCKIRLL   HDTVE
Sbjct: 61  AAVDINMGCPKSFSVSGGMGAALLSKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVE 120

Query: 162 LAKRIEKTGVSALAVHGRRVLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIK 221
           LA+RIEKTGVSALAVHGR+V DRPRDPAKW EIADVVSALSIPVIANGDVFEYDDF+RIK
Sbjct: 121 LARRIEKTGVSALAVHGRKVPDRPRDPAKWNEIADVVSALSIPVIANGDVFEYDDFERIK 180

Query: 222 SATGASSVMVARGALWNASIFSPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTR 281
           SATGASSVMVARGALWNAS+FSPEG+VSYE VKREYIRKC LWDND++STKHTL+EM+  
Sbjct: 181 SATGASSVMVARGALWNASMFSPEGKVSYEAVKREYIRKCILWDNDLKSTKHTLKEMIMH 240

Query: 282 YSNLGLPEWKAIVKSESSADLAELYGMGDYYRLVKSG 318
           YS L LPE KA++KSES ADLAELYG  +YY+LVK G
Sbjct: 241 YSCLELPEGKAVIKSESMADLAELYGQREYYQLVKPG 277


>Glyma01g15830.1 
          Length = 96

 Score =  162 bits (409), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/96 (77%), Positives = 87/96 (90%)

Query: 1  MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
          M+YRNK+VLAPMVRVGTLP RLLA QYGAD  Y EEI+ H++LKC+ +INELIGSTDFVE
Sbjct: 1  MEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYSEEIIYHRMLKCDHQINELIGSTDFVE 60

Query: 61 KGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQL 96
          KGT++VVFRTCD+EKD VVFQ+GTS+A+RALA AQL
Sbjct: 61 KGTKNVVFRTCDEEKDTVVFQIGTSNALRALATAQL 96


>Glyma17g18490.1 
          Length = 402

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 155/334 (46%), Gaps = 38/334 (11%)

Query: 4   RNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVEKGT 63
           R + ++APMV    LP R+L  +YGA   Y   +      + E+  NE            
Sbjct: 70  RPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNE------------ 117

Query: 64  ESVVFRTCDQEKDRVVF-QMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGMGA 122
               F TC  ++DR +F Q   +D    LAAA+ V      +DIN+GCP+  +  G  GA
Sbjct: 118 ---EFTTC--KEDRPLFVQFCANDPDVLLAAARKVEPFCDYVDINLGCPQRIAKRGYYGA 172

Query: 123 ALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR-- 180
            L+    L+  ++  L  NL +PV+CKIRL     DT++ A+ +E+ G   LAVHGR   
Sbjct: 173 FLMDNLPLVKSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRTRD 232

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
             D  +  A W  I  V +A+ IPV+ANG++   DD +     TG   V+ A   L N +
Sbjct: 233 EKDGKKFRADWNAIRAVKNAVRIPVLANGNIRHMDDVRDCLEETGVEGVLSAETLLENPA 292

Query: 241 IF---------------SPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNL 285
           +F               + +G++    +  EY++ C  +    R  +  + ++L  + +L
Sbjct: 293 LFDGFRTAEWVSESEGTNLDGKLDQADLLIEYLKLCEKYPVPWRMIRSHVHKLLGDWFSL 352

Query: 286 GLPEWKAIVKSESSADLAELYGMGDYYRLVKSGS 319
             P  +  +  +S      LY M D  RL  +G+
Sbjct: 353 Q-PHIREELNKQSKLTFEFLYDMVD--RLRSTGT 383


>Glyma05g20510.1 
          Length = 402

 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 36/328 (10%)

Query: 4   RNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVEKGT 63
           R + ++APMV    LP R+L  +YGA   Y   +      + E+  NE            
Sbjct: 70  RPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNE------------ 117

Query: 64  ESVVFRTCDQEKDRVVF-QMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGMGA 122
               F TC  ++DR +F Q   +D    L AA+ V      +DIN+GCP+  +  G  GA
Sbjct: 118 ---EFTTC--KEDRPLFVQFCANDPDVLLEAARKVERFCDYVDINLGCPQRIAKRGYYGA 172

Query: 123 ALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR-- 180
            L+    L+  ++  L  NL +PV+CKIRL     DT++ A+ +E+ G   LAVHGR   
Sbjct: 173 FLMDNLPLVKSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRTRD 232

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
             D  +  A W  I  V +A+ IPV+ANG++   DD +     TG   V+ A   L N +
Sbjct: 233 EKDGKKFRADWKAIRAVKNAVRIPVLANGNIRHIDDVRDCLEETGVEGVLSAETLLENPA 292

Query: 241 IFSP---------------EGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNL 285
           +F+                +G++    +  EY++ C  +    R  +  + ++L  + +L
Sbjct: 293 LFAGFRTAEWVSESEGTNVDGKLDQADLLIEYLKLCEKYPVPWRMIRSHVHKLLGDWFSL 352

Query: 286 GLPEWKAIVKSESSADLAELYGMGDYYR 313
             P  +  +  +S      LY M D  R
Sbjct: 353 Q-PHIREELNKQSKLTFEFLYDMVDRLR 379


>Glyma04g00940.1 
          Length = 643

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 38/309 (12%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           +D+R K+ LAP+  VG LP R +    GAD   GE      +  C   +         + 
Sbjct: 286 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGE------MAMCTNLLQGQASEWALLR 339

Query: 61  KGTESVVF--RTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSG 118
           + +   +F  + C    D V          R +   +  C  +  IDINMGCP    ++ 
Sbjct: 340 RHSSEDLFGVQICGAYPDTVA---------RTVELIEQECT-IDFIDINMGCPIDIVVNK 389

Query: 119 GMGAALLSKPELIHDILTTLKRNLSIPVTCKIR--LLSERHDTVELAKRIEKTGVSALAV 176
           G G+ALL+KP  +  I+         P+T K+R      ++    L   I   G SA+ +
Sbjct: 390 GAGSALLTKPMRMKSIVEVASGTAEKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTI 449

Query: 177 HGRRVLDRPRDPAKWAEIADVV--SALSIPVIANGDVFEYDDFQRIKSATGA-SSVMVAR 233
           HGR    R    A W  +      +  ++PV+ NGDVF + D+   ++     ++ MVAR
Sbjct: 450 HGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMVAR 509

Query: 234 GALWNASIFSPEGEVSYEVV---KREYIRKCFL------WDNDIRSTKHTLREMLT---- 280
           GAL    IF+   E  +  +   +R  I K F+      W +D +  + T R +L     
Sbjct: 510 GALIKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSY 569

Query: 281 --RYSNLGL 287
             RY  +GL
Sbjct: 570 TFRYIPVGL 578