Miyakogusa Predicted Gene

Lj0g3v0165739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165739.1 tr|B9IDP7|B9IDP7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775685 PE=4
SV=1,46.85,0.000000000001,DUF688,Protein of unknown function DUF688;
seg,NULL,CUFF.10385.1
         (168 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g13520.1                                                       122   2e-28
Glyma04g41330.1                                                       120   6e-28
Glyma06g13520.2                                                       117   6e-27

>Glyma06g13520.1 
          Length = 213

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 80/130 (61%), Gaps = 9/130 (6%)

Query: 26  LSSRPTTSPELN----RTAISVPFMWEEAPGKPRPCHTRSEP----TAAEDGXXXXXXXX 77
           L SRPT  PE      +  ISVPF WEEAPGKPR CHT S+P    TA +          
Sbjct: 22  LISRPTMPPETLMSPPQNTISVPFKWEEAPGKPRHCHTESDPEDSTTAVKKTLELPPRLL 81

Query: 78  XXXXXXXXXAKDDWASPMTVLDGPYVGRAMSFSSSYRTPREYLNSNFGSSRWSGFRKISK 137
                    +  D  SP TVLDGPYVGRAMSF++SYRTPR   NSNFGSSRWSG++K + 
Sbjct: 82  FLLDSTNKVSDVDGPSPTTVLDGPYVGRAMSFTTSYRTPRANWNSNFGSSRWSGYKKFTT 141

Query: 138 ED-EGSFDIS 146
           ED EGSFD S
Sbjct: 142 EDAEGSFDFS 151


>Glyma04g41330.1 
          Length = 207

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 72/107 (67%), Gaps = 3/107 (2%)

Query: 38  RTAISVPFMWEEAPGKPRPCHTRSEPTAAEDGXXXXXXX---XXXXXXXXXXAKDDWASP 94
           +  ISVPF WEEAPGKPR CHT SEP  + +                     +  D  SP
Sbjct: 34  QNTISVPFKWEEAPGKPRHCHTESEPEDSGNAVKKTLELPPRLLFLLDTNKVSDVDGPSP 93

Query: 95  MTVLDGPYVGRAMSFSSSYRTPREYLNSNFGSSRWSGFRKISKEDEG 141
           +TVLDGPYVGRAMSF++SYRTPR+Y NSNFGSSRW+G++KI+ EDEG
Sbjct: 94  ITVLDGPYVGRAMSFTTSYRTPRDYWNSNFGSSRWTGYKKITTEDEG 140


>Glyma06g13520.2 
          Length = 158

 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 73/114 (64%), Gaps = 5/114 (4%)

Query: 38  RTAISVPFMWEEAPGKPRPCHTRSEP----TAAEDGXXXXXXXXXXXXXXXXXAKDDWAS 93
           +  ISVPF WEEAPGKPR CHT S+P    TA +                   +  D  S
Sbjct: 11  QNTISVPFKWEEAPGKPRHCHTESDPEDSTTAVKKTLELPPRLLFLLDSTNKVSDVDGPS 70

Query: 94  PMTVLDGPYVGRAMSFSSSYRTPREYLNSNFGSSRWSGFRKISKED-EGSFDIS 146
           P TVLDGPYVGRAMSF++SYRTPR   NSNFGSSRWSG++K + ED EGSFD S
Sbjct: 71  PTTVLDGPYVGRAMSFTTSYRTPRANWNSNFGSSRWSGYKKFTTEDAEGSFDFS 124