Miyakogusa Predicted Gene

Lj0g3v0164369.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164369.1 Non Chatacterized Hit- tr|I1JB10|I1JB10_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,74.14,1e-18,FAMILY NOT NAMED,NULL; B3,B3 DNA binding domain;
DNA-binding pseudobarrel domain,DNA-binding pseudob,CUFF.10275.1
         (69 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g45640.1                                                        97   3e-21
Glyma06g04200.1                                                        59   2e-09
Glyma04g04030.1                                                        57   6e-09
Glyma02g40400.1                                                        55   2e-08

>Glyma01g45640.1 
          Length = 181

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 52/58 (89%)

Query: 2   GLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVRSQKPDEVEGALGLLKLDKCKK 59
           GLS GWRGFSIAHNLLE+DVL+FHL+QP KF+VYI+RSQ+ DE++GAL LLK D C+K
Sbjct: 113 GLSAGWRGFSIAHNLLEMDVLIFHLVQPSKFRVYIIRSQESDELDGALVLLKSDGCRK 170


>Glyma06g04200.1 
          Length = 232

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   GLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVRSQKPDE 44
           GLSGGWRGF+IAH+L + D L+F LI+   FKVYIVR+  P +
Sbjct: 185 GLSGGWRGFAIAHDLADGDALIFQLIKRTTFKVYIVRAICPPD 227


>Glyma04g04030.1 
          Length = 228

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 32/43 (74%)

Query: 2   GLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVRSQKPDE 44
           GLSGGW+GF++ H+L + D ++F LI+   FKVYI+R+  P E
Sbjct: 184 GLSGGWKGFAVGHDLADGDAVIFQLIKHTAFKVYIIRANSPPE 226


>Glyma02g40400.1 
          Length = 348

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 2   GLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVRSQKPDEVE 46
           GLSGGWR F++ H L + D LVF LI+  +FK+YIVR+  PD VE
Sbjct: 134 GLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRA-FPDSVE 177