Miyakogusa Predicted Gene

Lj0g3v0163489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163489.1 tr|A9SJ85|A9SJ85_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_130836,42.86,8e-18,Sec63,Sec63 domain; no
description,NULL; SUBFAMILY NOT NAMED,NULL; HELICASE
SKI2W,NULL,CUFF.10191.1
         (123 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g40460.1                                                        56   9e-09
Glyma08g18490.1                                                        56   1e-08

>Glyma15g40460.1 
          Length = 2183

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 51   PRFPKIKEEQWWLILGNSCTSELYALKRVSFSDHLNTSMKLPLTS-ANLEEMKLILVSDC 109
            PR+PK KEE WWLI+G++ T+ L A+KRVS    L   ++    + A  +   L  + D 
Sbjct: 2098 PRYPKAKEEGWWLIVGDTKTNLLLAIKRVSLQRRLKAKLEFDAPADAGRKSYSLYFMCDS 2157

Query: 110  YIGFEQEH 117
            Y+G +QE+
Sbjct: 2158 YLGCDQEY 2165


>Glyma08g18490.1 
          Length = 2183

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 51   PRFPKIKEEQWWLILGNSCTSELYALKRVSFSDHLNTSMKLPLTS-ANLEEMKLILVSDC 109
            PR+PK KEE WWLI+G++ T+ L A+KRVS    L   ++    + A  +   L  + D 
Sbjct: 2098 PRYPKAKEEGWWLIVGDTKTNLLLAIKRVSLQRKLKAKLEFDAPADAGRKSYSLYFMCDS 2157

Query: 110  YIGFEQEH 117
            Y+G +QE+
Sbjct: 2158 YLGCDQEY 2165