Miyakogusa Predicted Gene
- Lj0g3v0160799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0160799.1 tr|G7KFP7|G7KFP7_MEDTR DNA-binding protein
SMUBP-2 OS=Medicago truncatula GN=MTR_5g076380 PE=4
SV=1,56.3,0,SUBFAMILY NOT NAMED,NULL; DNA2/NAM7 HELICASE FAMILY,NULL;
P-loop containing nucleoside triphosphate ,CUFF.9978.1
(332 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma14g38960.1 266 2e-71
Glyma18g05200.1 233 3e-61
Glyma08g24100.1 225 5e-59
Glyma11g32920.1 197 1e-50
Glyma05g26540.1 163 2e-40
Glyma20g08150.1 135 5e-32
Glyma06g17340.1 97 2e-20
Glyma19g32390.2 55 1e-07
Glyma19g32390.1 55 1e-07
Glyma03g29540.1 54 2e-07
Glyma11g04310.1 52 9e-07
Glyma01g41110.1 52 1e-06
Glyma01g44560.1 52 1e-06
>Glyma14g38960.1
Length = 795
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/283 (55%), Positives = 198/283 (69%), Gaps = 26/283 (9%)
Query: 2 ITNIRPQSVDDL-NRPGSYYNITYVRGSKHPFTDKVSVLSSKCIEVSDLRSNHNKLYAIY 60
T+IRP+++ DL NRP Y I YV G K T+++ + +SK + KLYA Y
Sbjct: 98 FTDIRPKNIGDLINRPKLSYVIAYVCGRKDANTNEIPIRASK--------NTKQKLYATY 149
Query: 61 LMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLIIPGI 120
L+NLTTN RIWKAL + + NMNIIK VLQPD + G +CQ C ++ +IP
Sbjct: 150 LLNLTTNIRIWKALKYKGEEANMNIIKDVLQPD--LSRGVDCQNCKCRKS-----VIPVC 202
Query: 121 ----IRSQNLNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKLEAR 176
+RSQNLNESQE A+SSC+ M C+H TKLIWGPPGTGKTKT+ACLL L+++ R
Sbjct: 203 KWYPLRSQNLNESQEVAISSCLTM--CDHMVTKLIWGPPGTGKTKTLACLLRCLLRVRHR 260
Query: 177 TLTCAPTNTAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVFLDY 236
TL CAPTNTAV++VA RL +LV S ++TYGLGDIVLFGNK+RMKVDSY GL DVFLD+
Sbjct: 261 TLACAPTNTAVLEVAARLRNLVNGSLGFDTYGLGDIVLFGNKSRMKVDSYTGLRDVFLDH 320
Query: 237 RVKSLLKC---LTGWKHDFESMILLLQEPRKQYLLLHGNEKGL 276
RV++L KC L+GWKH ESMI LL++P++QY + EKG+
Sbjct: 321 RVQNLSKCFDPLSGWKHYLESMIQLLEDPKEQY-SSYEKEKGI 362
>Glyma18g05200.1
Length = 1063
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 182/280 (65%), Gaps = 17/280 (6%)
Query: 2 ITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDK----VSVLSSKCIEVSDLRSNHNKL- 56
+T+ RP +DDLN+ G+ Y I +R + D+ V +L+S+ I++ +K
Sbjct: 108 LTDKRPTCIDDLNKHGNSYLIALIRKVRKKNDDENVFEVQILASQPIKLEMYWQEDDKYI 167
Query: 57 -----YAIYLMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGEN- 110
+A+YL +LTTN RIW ALNS G +++ K++LQPDS V GENC C S +
Sbjct: 168 YGIYGFAVYLFSLTTNMRIWNALNSDPDGPVIHVSKQLLQPDSAV--GENCAQCYSFQRY 225
Query: 111 PQASLIIPGIIRSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFS 169
+I IR +LN++QE+ V SC+ C+H NT KLIWGPPGTGKTKTVA LLF+
Sbjct: 226 TDDGSMIGAAIRLFDLNKAQEEGVLSCLAARECSHKNTVKLIWGPPGTGKTKTVASLLFA 285
Query: 170 LVKLEARTLTCAPTNTAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEGL 229
L+K + RTLTCAPTN AV++V +R L LVT S +Y TYGLGDI+LFGN+ RM +D + L
Sbjct: 286 LLKKKCRTLTCAPTNVAVLEVTSRFLRLVTESIDYHTYGLGDILLFGNRKRMSIDDRDDL 345
Query: 230 EDVFLDYRVKSLLKC---LTGWKHDFESMILLLQEPRKQY 266
D+FLDYR L KC L+GWKH E +ILLL+ P +QY
Sbjct: 346 LDIFLDYRANILAKCFAPLSGWKHHLEQVILLLENPEEQY 385
>Glyma08g24100.1
Length = 982
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/271 (47%), Positives = 174/271 (64%), Gaps = 16/271 (5%)
Query: 2 ITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSKCIEVSDLRS-NHNKLYAIY 60
+TN+RP+ DDLN P + + R S + ++VLSSK I + N + L+A+Y
Sbjct: 114 VTNLRPKYTDDLNSPCVFAFVH--RAS----NNSITVLSSKLIAAQGVHDQNKDILFAVY 167
Query: 61 LMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLIIPGI 120
L NLTTN RIW++L+S+ + N+N+I VLQ +R E C C + + I G
Sbjct: 168 LTNLTTNIRIWRSLSSELEARNLNMIDEVLQ----LRSSE-CGTCAEWLDNGLNSEIRGK 222
Query: 121 IRSQNLNESQEDAVSSCVNMIN--CNHNNTKLIWGPPGTGKTKTVACLLFSLVKLEARTL 178
I + +LN+SQ DAV SC+++ + N+ KLIWGPPGTGKTKTV +LF L+KL+ RTL
Sbjct: 223 ICNSDLNDSQRDAVLSCISLREEWRHQNSVKLIWGPPGTGKTKTVGLMLFCLLKLKCRTL 282
Query: 179 TCAPTNTAVIQVATRLLSLV--TSSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVFLDY 236
TCAPTN AV++VA R+L V S+EY YGLGDIVLFGN RM +D + L DVFLDY
Sbjct: 283 TCAPTNVAVLEVAKRVLVQVRKNESHEYGGYGLGDIVLFGNGKRMNIDDHIELHDVFLDY 342
Query: 237 RVKSLLKCLTGWKHDFESMILLLQEPRKQYL 267
RV +L K L WKH S+I LL+ P++ +L
Sbjct: 343 RVNALRKFLGVWKHSLASIISLLENPQRLFL 373
>Glyma11g32920.1
Length = 649
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 136/174 (78%), Gaps = 3/174 (1%)
Query: 115 LIIPGIIRSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKL 173
L++ IIRSQNLN+SQ++AV SCV C+HN+T KLIWGPPGTGKTKTVA LLFSL+KL
Sbjct: 7 LLVQNIIRSQNLNQSQKEAVVSCVTSRECHHNDTIKLIWGPPGTGKTKTVASLLFSLLKL 66
Query: 174 EARTLTCAPTNTAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVF 233
+ARTL CAPTNTAV++VA RL +LV + E +T+G GDIV+FGNK+RMKVDSY L DVF
Sbjct: 67 KARTLACAPTNTAVLEVAARLQNLVMETLECDTFGFGDIVVFGNKSRMKVDSYRCLNDVF 126
Query: 234 LDYRVKSLLKCLTGWKHDFESMILLLQEPRKQY-LLLHGNEKGLVSLEESAVEK 286
LDYRV +LLKC +GWKH ESMI L++ P++QY E L SLEE A +K
Sbjct: 127 LDYRVDNLLKC-SGWKHSLESMIKLIEYPKQQYDSYKREEENSLKSLEEFAKQK 179
>Glyma05g26540.1
Length = 1146
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 169/296 (57%), Gaps = 33/296 (11%)
Query: 1 MITNIRPQSVDDLNRPGSYYNITYVRG-----SKHPFTDKVS---VLSSKCIEVSDLRSN 52
++ + +P++V+DL R G + + G +++ TD +S V +SK I+V++
Sbjct: 118 ILADFKPETVEDLQRVGRTWTLVLSAGVAEEENENDNTDIMSTFKVAASKNIDVNE--EG 175
Query: 53 HNKLYAIYLMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDS----NVRGGENCQICLSG 108
L+ ++L N+ + RIW AL+ GN +IK++L + + +I
Sbjct: 176 QKSLFIVFLTNIIPDRRIWSALHMP---GNSMLIKKILCAGGVSMWHFQVVHFFKIFAYS 232
Query: 109 ENPQASLIIPGIIRSQN---LNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVA 164
N S I G R + LN SQ +A+ +C++ I C H +T LIWGPPGTGKTKT+
Sbjct: 233 YN---SWIYDGEYRLRKVVKLNGSQYEAIWACLSSIQCCHKSTVDLIWGPPGTGKTKTLG 289
Query: 165 CLLFSLVKLEARTLTCAPTNTAVIQVATRLLSLVTSS----NEYETYGLGDIVLFGNKTR 220
LL++L+K+ RTL CAPTN AV +VA+R+LS+V S +E LGD+VLFGN R
Sbjct: 290 TLLYALLKMNHRTLVCAPTNVAVKEVASRVLSMVRESFDRNSEALFCALGDMVLFGNHER 349
Query: 221 MKVDSYEGLEDVFLDYRVKSLLKC---LTGWKHDFESMILLLQEPRKQYLLLHGNE 273
+KV + +ED++LDYRVK L+ C LTGW+ F SMI LL+ Y + NE
Sbjct: 350 LKVGA--DIEDIYLDYRVKHLMMCFAPLTGWRCCFSSMIDLLENCVSHYHIFIENE 403
>Glyma20g08150.1
Length = 788
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 60/311 (19%)
Query: 1 MITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSKCIEVSDLRSNHNK-LYAI 59
++ + +P++V DL R + + D S L K + DL NK L+ I
Sbjct: 54 ILADYKPEAVRDLQRIRRLWCFASTVWTTEDEGDSTS-LKVKASKDIDLEERRNKTLFLI 112
Query: 60 YLMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLIIPG 119
+L N+ N RIW G
Sbjct: 113 FLTNVNPNRRIW-----------------------------------------------G 125
Query: 120 IIRSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKLEARTL 178
+ LNESQ A+S+C++ +NCNHN+ KLIWGPPGTGKT+T+ LL++L+K++ R L
Sbjct: 126 ALHMPELNESQNKAISACLSGLNCNHNSAVKLIWGPPGTGKTRTLGTLLYALLKMKYRVL 185
Query: 179 TCAPTNTAVIQVATRLLSLVTSSNEYETYGL----GDIVLFGNKTRMKVDSYEGLEDVFL 234
CAPTN A+ +VA+R++ ++ ++ E+ L G+++LFG R+K+ E +EDV+L
Sbjct: 186 VCAPTNVAIKEVASRVVDIMKEAHSKESGDLFCSMGEVLLFGYNERLKIG--EDVEDVYL 243
Query: 235 DYRVKSLLKCLT---GWKHDFESMILLLQEPRKQYLLLHGNEKGLVSLEES-AVEKDKGN 290
D+RV+ L +C + G+ +SMI L+ Y + N K S+ +S V +G
Sbjct: 244 DHRVQQLTECFSPYNGFSSSLKSMIGFLEYCVSDYHIYVENMKREGSMAKSFLVFLREGF 303
Query: 291 DLLSTPLMGYV 301
++ PL ++
Sbjct: 304 HSIALPLKAFI 314
>Glyma06g17340.1
Length = 475
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 9/148 (6%)
Query: 126 LNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKLEARTLTCAPTNT 185
LNESQ A+S+C++ CNHN+ + G P K K F+L+K++ R L CAPTN
Sbjct: 17 LNESQNKAISACLSGHKCNHNSVVKLMGSPWDRKDKIFGHTTFALLKMKYRVLVCAPTNI 76
Query: 186 AVIQVATRLLSLVTSSNEYETYGL----GDIVLFGNKTRMKVDSYEGLEDVFLDYRVKSL 241
A+ +VA+R+++LV S+ E+ L GD++L GN R+K+ E ++D++LD+ + L
Sbjct: 77 AIKEVASRVVTLVKESHAKESGDLFCSMGDLLLSGNNERLKIG--EDIKDIYLDHLAQQL 134
Query: 242 LKCL---TGWKHDFESMILLLQEPRKQY 266
+CL TG +SMI L+ Y
Sbjct: 135 AECLAPSTGLSSCLKSMIGFLENCTSYY 162
>Glyma19g32390.2
Length = 579
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 124 QNLNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKLEARTLTCAPT 183
+NL+ SQ++AVS ++ N L+ GPPGTGKT TV ++ VK ++ L CA +
Sbjct: 127 KNLDHSQKEAVSKALS-----SKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 181
Query: 184 NTAVIQVATRLL 195
N AV + RL+
Sbjct: 182 NIAVDNIVERLV 193
>Glyma19g32390.1
Length = 648
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 124 QNLNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKLEARTLTCAPT 183
+NL+ SQ++AVS ++ N L+ GPPGTGKT TV ++ VK ++ L CA +
Sbjct: 196 KNLDHSQKEAVSKALS-----SKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 250
Query: 184 NTAVIQVATRLL 195
N AV + RL+
Sbjct: 251 NIAVDNIVERLV 262
>Glyma03g29540.1
Length = 648
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 124 QNLNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKLEARTLTCAPT 183
+NL+ SQ++AVS ++ N L+ GPPGTGKT TV ++ VK ++ L CA +
Sbjct: 196 KNLDHSQKEAVSKALS-----SKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 250
Query: 184 NTAVIQVATRLL 195
N AV + RL+
Sbjct: 251 NIAVDNIVERLV 262
>Glyma11g04310.1
Length = 1268
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 126 LNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKL-EARTLTCAPTN 184
LN SQ AV S + LI GPPGTGKT T A L++ + K + + L CAP+N
Sbjct: 486 LNASQVFAVKSVL------QRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSN 539
Query: 185 TAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVFLDYRVKSL 241
AV Q+A ++ + GL +V K+R V S +E + L Y+V+ L
Sbjct: 540 VAVDQLAEKISAT----------GL-KVVRLCAKSREAVSS--PVEHLTLHYQVRHL 583
>Glyma01g41110.1
Length = 1266
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 126 LNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKL-EARTLTCAPTN 184
LN SQ AV S + LI GPPGTGKT T A L++ + K + + L CAP+N
Sbjct: 483 LNASQVFAVKSVL------QRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSN 536
Query: 185 TAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVFLDYRVKSL 241
AV Q+A ++ + GL +V K+R V S +E + L Y+V+ L
Sbjct: 537 VAVDQLAEKISAT----------GL-KVVRLCAKSREAVSS--PVEHLTLHYQVRHL 580
>Glyma01g44560.1
Length = 886
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 131 EDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKLE--ARTLTCAPTNTAVI 188
E+ +SS ++ C +I GPPGTGKT+T+ + L K AR L CAP+N+A
Sbjct: 399 EEQISSIKMILGCKGAPPYMIHGPPGTGKTRTMVEAILQLYKYHKNARILVCAPSNSAAD 458
Query: 189 QVATRLLS 196
+ +LL+
Sbjct: 459 YILEKLLA 466