Miyakogusa Predicted Gene

Lj0g3v0157999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0157999.1 Non Chatacterized Hit- tr|K4AMF8|K4AMF8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si040099,40.23,7e-18,coiled-coil,NULL; HLH,Helix-loop-helix domain;
no description,Helix-loop-helix domain; helix loop he,CUFF.9769.1
         (257 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g28630.1                                                       270   1e-72
Glyma03g28610.1                                                       193   1e-49
Glyma19g31350.1                                                       107   1e-23
Glyma19g31360.1                                                       100   3e-21
Glyma20g29120.2                                                        51   1e-06
Glyma20g29120.1                                                        51   1e-06
Glyma06g19490.1                                                        49   4e-06
Glyma04g41710.1                                                        49   8e-06
Glyma06g13080.1                                                        48   9e-06

>Glyma03g28630.1 
          Length = 241

 Score =  270 bits (690), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 157/263 (59%), Positives = 193/263 (73%), Gaps = 35/263 (13%)

Query: 4   FPSPVFSYSNMECLLDDEPFNHNQNNFNKERVSSSEYSFPNQ---PQPAVVLQAKVVEML 60
           F  PVFS       L++EP +++          SS+YSFP Q   PQ  + L+   +E  
Sbjct: 5   FSPPVFSTKGW--FLEEEPLSYD---------VSSDYSFPYQFFAPQTQIELE---IERS 50

Query: 61  TAPSPD----TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKY 116
           +APSP+     KKL+HNASERDRRKK+N L++SLRSLLP G DQ KKMSIPAT+S V+KY
Sbjct: 51  SAPSPEDPAMVKKLSHNASERDRRKKVNDLVSSLRSLLP-GPDQTKKMSIPATVSRVLKY 109

Query: 117 LPELQQQVKGLTKKKEKLLSRISQ--QGDAVNEESRKRKKFINPHHNSADFIVSNSWLND 174
           +PELQ QV+ LTKKKE+LL RIS+  +GD+VN+ES++R      HHNS DF VS S LND
Sbjct: 110 IPELQHQVQALTKKKEELLCRISKNLKGDSVNKESQRRIS----HHNS-DFAVSTSRLND 164

Query: 175 CEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKT 234
           CEA +HI  S+YE    HK PL +I+ CLENNG +LLNASS+ETFGGRVFY LHFQVEKT
Sbjct: 165 CEAVVHI--SSYEA---HKAPLSDILQCLENNGLYLLNASSSETFGGRVFYNLHFQVEKT 219

Query: 235 HRLESDIITQKLLSIYEKKQRMF 257
           HRLES+I+T+KLLSIYE KQR+F
Sbjct: 220 HRLESEILTEKLLSIYE-KQRIF 241


>Glyma03g28610.1 
          Length = 156

 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 131/166 (78%), Gaps = 13/166 (7%)

Query: 67  TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKG 126
            KKL+HNASERDRRKK+N L++SLRSLLP   DQ KKMSIP T+S VIKY+PELQQQV+ 
Sbjct: 2   VKKLSHNASERDRRKKVNHLVSSLRSLLPVA-DQTKKMSIPTTVSRVIKYIPELQQQVEA 60

Query: 127 LTKKKEKLLSRISQQ--GDAVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISS 184
           L+KKKE LL RIS+Q  GDAVN++S++R      HHNS DF+VS S LNDCEA +HI  S
Sbjct: 61  LSKKKEDLLCRISRQLQGDAVNKDSQRRI----SHHNS-DFVVSTSRLNDCEAVVHI--S 113

Query: 185 NYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQ 230
           +YE    HK PL EI+ CLENNG  LLNASS+ETFGGRVFY LHFQ
Sbjct: 114 SYEA---HKAPLSEILQCLENNGLLLLNASSSETFGGRVFYNLHFQ 156


>Glyma19g31350.1 
          Length = 160

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 88/178 (49%), Gaps = 66/178 (37%)

Query: 57  VEMLTAPSPD----TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISG 112
           +E  TAPSPD     KKL+HNASERDRRKKIN+L++SLRSLLP                 
Sbjct: 32  IESSTAPSPDDPAMVKKLSHNASERDRRKKINNLVSSLRSLLPVAD-------------- 77

Query: 113 VIKYLPELQQQVKGLTKKKEKLLSRISQQGDAVNEESRKRKKFINPHHNSADFIVSNSWL 172
                     Q +G  KK E                           H+   F    S L
Sbjct: 78  ----------QTEG--KKNE---------------------------HSGYSFA---SRL 95

Query: 173 NDCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQ 230
           NDCE  +HI   +YE     K PL EI+ CLENNG +LLN SS+ETFGGR F+ LHFQ
Sbjct: 96  NDCEVVVHI---SYEA---QKAPLSEILHCLENNGLYLLNGSSSETFGGRAFHNLHFQ 147


>Glyma19g31360.1 
          Length = 116

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 80/120 (66%), Gaps = 20/120 (16%)

Query: 11  YSNMECLLDDEPFNHNQNNFNKERVSSSEYSFPNQPQPAVVLQAKV---VEMLTAPSPD- 66
           +S    LL++EP +++          SS+ SFP Q      LQ ++   +E  TAPSPD 
Sbjct: 10  FSTKGWLLEEEPLSYD---------VSSKNSFPYQ---FYSLQTQIEVEIERSTAPSPDD 57

Query: 67  ---TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQ 123
               KKL+HNASERDRRKK+N+L++SLR LLP  +DQ KKMSIPAT+S V+KY+PELQ Q
Sbjct: 58  PAMVKKLSHNASERDRRKKVNNLVSSLRLLLPV-EDQTKKMSIPATVSRVLKYIPELQHQ 116


>Glyma20g29120.2 
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 18/169 (10%)

Query: 67  TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMK-KMSIPATISGVIKYLPELQQQVK 125
           TKK+ H   E+ RR+++ +L ASLRSLLP   D +K K SI   ++  + Y+  LQ+ +K
Sbjct: 73  TKKMVHREIEKQRRQEMATLHASLRSLLPL--DFIKGKRSISDQMNEAVNYINHLQKNIK 130

Query: 126 GLTKKKEKLLSRISQQGDAVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISSN 185
            L+ K++KL  + S     +N      + +    H S+ F V      +   A+ I  S 
Sbjct: 131 ELSDKRDKLKKKPS----IINSSPEDHENY---KHASSGFTVH----QNSGGAVGIEISG 179

Query: 186 YEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKT 234
           + E    + PL +++  +   G  ++N  ST+   GR+ + L  +V+ +
Sbjct: 180 FSEE---EVPLSKLLELVFEEGLEVVNCLSTKV-NGRLLHSLQCEVDNS 224


>Glyma20g29120.1 
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 18/169 (10%)

Query: 67  TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMK-KMSIPATISGVIKYLPELQQQVK 125
           TKK+ H   E+ RR+++ +L ASLRSLLP   D +K K SI   ++  + Y+  LQ+ +K
Sbjct: 73  TKKMVHREIEKQRRQEMATLHASLRSLLPL--DFIKGKRSISDQMNEAVNYINHLQKNIK 130

Query: 126 GLTKKKEKLLSRISQQGDAVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISSN 185
            L+ K++KL  + S     +N      + +    H S+ F V      +   A+ I  S 
Sbjct: 131 ELSDKRDKLKKKPS----IINSSPEDHENY---KHASSGFTVH----QNSGGAVGIEISG 179

Query: 186 YEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKT 234
           + E    + PL +++  +   G  ++N  ST+   GR+ + L  +V+ +
Sbjct: 180 FSEE---EVPLSKLLELVFEEGLEVVNCLSTKV-NGRLLHSLQCEVDNS 224


>Glyma06g19490.1 
          Length = 187

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 60  LTAPSPDTKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPE 119
           + + S ++ KL+    ER+RR  + SL   L SL+P     +K +     +    +Y+ +
Sbjct: 6   VASTSNESSKLDRKTIERNRRTHMKSLCHQLSSLIPPN---LKPVKPKDQLDLAARYIRQ 62

Query: 120 LQQQVKGLTKKKEKLLSRISQQGDAVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAI 179
           + ++V+ L ++KE+ +S  S  G         RK F    +N+ +  +    L D  + I
Sbjct: 63  MTERVEKLKRQKEQAMSNQSNDG---------RKMF----NNNVESKLPILELRDLGSGI 109

Query: 180 HIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQ 230
            +I        N    L E+I  LE  G  ++ AS + T G ++FY++H Q
Sbjct: 110 EVILVT---GLNKTFMLYEVISVLEEEGAEVVTASFS-TVGDKIFYVVHAQ 156


>Glyma04g41710.1 
          Length = 328

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 65  PDTK-KLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQ 123
           PD + K++H   ER+RRK++N  +  LRSL+P     +K+    + I GV+ Y+ ELQQ 
Sbjct: 85  PDGQQKMSHITVERNRRKQMNEHLTVLRSLMPCF--YVKRGDQASIIGGVVDYISELQQV 142

Query: 124 VKGLTKKKEK 133
           ++ L  KK++
Sbjct: 143 LQALEAKKQR 152


>Glyma06g13080.1 
          Length = 304

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 68  KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGL 127
           +K++H   ER+RRK++N  +  LRSL+P     +K+    + I GV+ Y+ ELQQ ++ L
Sbjct: 85  QKMSHITVERNRRKQMNEHLTVLRSLMPCF--YVKRGDQASIIGGVVDYISELQQVLQAL 142

Query: 128 TKKKEK 133
             KK++
Sbjct: 143 EAKKQR 148