Miyakogusa Predicted Gene

Lj0g3v0157289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0157289.1 tr|G7KPW4|G7KPW4_MEDTR Lin-54-like protein
OS=Medicago truncatula GN=MTR_6g087590 PE=4
SV=1,51.18,1e-17,seg,NULL,CUFF.9718.1
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g04180.1                                                        69   9e-13
Glyma08g04180.3                                                        69   1e-12
Glyma08g04180.2                                                        69   1e-12
Glyma09g32420.1                                                        46   8e-06

>Glyma08g04180.1 
          Length = 495

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 49/112 (43%), Gaps = 20/112 (17%)

Query: 2   GEGEGGDCAPANVPXXXXXXXXXXXXXXLDAPAKKLARQLDFTALSEXXXXXXXXXXXXX 61
           GE EG D AP NV                D PAKKLARQLDFT                 
Sbjct: 4   GEAEGSDGAPKNV---VANDVVANALLPFDVPAKKLARQLDFTGFG-------------- 46

Query: 62  XXXXXXXXXXXXXXXXXXXXXXXXVRVGKPESPKSKPRPNFEIKEATPKKQK 113
                                   VRVGKPESPKS+PRP FEIKEATPKKQK
Sbjct: 47  ---GMSTTPQPQPPVVLPLRPSTSVRVGKPESPKSRPRPGFEIKEATPKKQK 95


>Glyma08g04180.3 
          Length = 340

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 49/112 (43%), Gaps = 20/112 (17%)

Query: 2   GEGEGGDCAPANVPXXXXXXXXXXXXXXLDAPAKKLARQLDFTALSEXXXXXXXXXXXXX 61
           GE EG D AP NV                D PAKKLARQLDFT                 
Sbjct: 4   GEAEGSDGAPKNV---VANDVVANALLPFDVPAKKLARQLDFTGFG-------------- 46

Query: 62  XXXXXXXXXXXXXXXXXXXXXXXXVRVGKPESPKSKPRPNFEIKEATPKKQK 113
                                   VRVGKPESPKS+PRP FEIKEATPKKQK
Sbjct: 47  ---GMSTTPQPQPPVVLPLRPSTSVRVGKPESPKSRPRPGFEIKEATPKKQK 95


>Glyma08g04180.2 
          Length = 340

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 49/112 (43%), Gaps = 20/112 (17%)

Query: 2   GEGEGGDCAPANVPXXXXXXXXXXXXXXLDAPAKKLARQLDFTALSEXXXXXXXXXXXXX 61
           GE EG D AP NV                D PAKKLARQLDFT                 
Sbjct: 4   GEAEGSDGAPKNV---VANDVVANALLPFDVPAKKLARQLDFTGFG-------------- 46

Query: 62  XXXXXXXXXXXXXXXXXXXXXXXXVRVGKPESPKSKPRPNFEIKEATPKKQK 113
                                   VRVGKPESPKS+PRP FEIKEATPKKQK
Sbjct: 47  ---GMSTTPQPQPPVVLPLRPSTSVRVGKPESPKSRPRPGFEIKEATPKKQK 95


>Glyma09g32420.1 
          Length = 561

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/24 (87%), Positives = 23/24 (95%)

Query: 90  KPESPKSKPRPNFEIKEATPKKQK 113
           KPESPKS+ RPNFEIK+ATPKKQK
Sbjct: 69  KPESPKSRSRPNFEIKDATPKKQK 92