Miyakogusa Predicted Gene

Lj0g3v0157249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0157249.1 Non Chatacterized Hit- tr|Q9C662|Q9C662_ARATH
Putative uncharacterized protein F28B23.15
OS=Arabidop,57.61,4e-19,IMPORTIN 9 (IMP9) (RAN-BINDING PROTEIN
9),NULL; IMPORTIN-7, 8, 11,NULL,CUFF.9730.1
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g14280.1                                                       160   3e-40
Glyma04g23080.1                                                        88   2e-18

>Glyma02g14280.1 
          Length = 1015

 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/93 (87%), Positives = 87/93 (93%)

Query: 1   MRSLLDVASRLLDPNLESSGSLFVGSYILQLILHLPSHMAIHIRDLVAALVRRMQSAQIA 60
           MRSLLD+ASRLLDP LESSGSLFVGSYILQLILHLP+ MA+HI+DLVAALV+RMQSAQ  
Sbjct: 721 MRSLLDIASRLLDPKLESSGSLFVGSYILQLILHLPTQMAVHIQDLVAALVKRMQSAQNC 780

Query: 61  SLRSSLLVVFARLVHLSVPNVGQFIDLLISIPA 93
            L SSLL+VFARLVHLSVPNVGQFIDLLISIPA
Sbjct: 781 ILLSSLLIVFARLVHLSVPNVGQFIDLLISIPA 813


>Glyma04g23080.1 
          Length = 506

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 58/83 (69%), Gaps = 15/83 (18%)

Query: 11  LLDPNLESSGSLFVGSYILQLILHLPSHMAIHIRDLVAALVRRMQSAQIASLRSSLLVVF 70
           LLDP LESSGSLFVGS ILQLILHLPS + +HIRDL+AALV+ MQSAQ   L SSLL+  
Sbjct: 379 LLDPKLESSGSLFVGSCILQLILHLPSQIVVHIRDLIAALVKHMQSAQNFVLLSSLLI-- 436

Query: 71  ARLVHLSVPNVGQFIDLLISIPA 93
                        FIDLLISI A
Sbjct: 437 -------------FIDLLISILA 446