Miyakogusa Predicted Gene

Lj0g3v0156549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156549.1 Non Chatacterized Hit- tr|K4A4M1|K4A4M1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si033825,27.99,9e-19,seg,NULL; PUTATIVE UNCHARACTERIZED
PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
(VPS13),CUFF.9674.1
         (274 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04260.1                                                        97   2e-20

>Glyma11g04260.1 
          Length = 4131

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 116  EAEGSDT-SNFVSLSFSTRSSGSPDYNGIDTQMCVRMSKLEFFCNRPTIVALISFGLDIS 174
            E E +DT  +FV          S  Y  ID Q+ V ++ L FFC RPTI+A++ F   I+
Sbjct: 1086 ELELNDTLESFVKAQIIIYDQNSAQYKNIDKQVIVTLATLTFFCRRPTILAIMEFMNSIN 1145

Query: 175  SGNK-----------MTSHTSETSPERPSVKERTDEKGRVKGLLGFGKERVVFYLNMNVD 223
              +K                ++ S +   ++    E+  VKGL G GK RV+F L + + 
Sbjct: 1146 IEDKNLATSSDSSSTAARMINDISRDVDDLQATAIEEHAVKGLFGKGKSRVMFNLTLKMA 1205

Query: 224  SVTIFLNKEDDSQLAKLVQESFLMDLKVHPSSLSIDGTLGNFRLCDTSL 272
               I L KE++++LA L QES L D+KV PSS SI   LGN ++ D SL
Sbjct: 1206 QAQILLMKENETKLACLSQESLLTDIKVFPSSFSIKAALGNLKISDDSL 1254