Miyakogusa Predicted Gene

Lj0g3v0156409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156409.1 tr|G7IZH3|G7IZH3_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_3g029670 PE=4 SV=1,34.58,6e-19,seg,NULL;
DUF295,Protein of unknown function DUF295,CUFF.9667.1
         (225 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g11470.1                                                       110   2e-24

>Glyma10g11470.1 
          Length = 368

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 111/234 (47%), Gaps = 31/234 (13%)

Query: 2   LLTIHESEKLAVFGYGDGDDERWTIMPAPDMSTNYHDVSAFNGRLYAVESGGRTVVVGPD 61
           LLTIH S KLA+F  G+   + WT++P  DM T Y DV  F G LY  +S GRTV V PD
Sbjct: 156 LLTIHVSGKLALFRSGE---DGWTVIP--DMPTPYDDVCVFKGNLYGADSNGRTVRVRPD 210

Query: 62  S---VLEEEPFAEHYGPNTGCCYNEK--FXXXXXXXXXXXXKHGGFCEDIKYKYEGDNDI 116
                L  EP    +G +       +                 G F ED  +  E    +
Sbjct: 211 DGGLTLAAEPV---FGGDKKFLVESEGALLLVDMYLSYYSCTQGLFHED--FDEEDVAGM 265

Query: 117 DEYKEGMFRVFRFGXXXXXXXXXXSWVHVRNVRDRVLFIGDDCAFSVSASDLGVDEGNYV 176
              +   F VFR             WV + ++ +RVLF+GDDCAFS SA DL +  GN V
Sbjct: 266 GWERTVKFDVFRL------DEEGKKWVELTDLGERVLFLGDDCAFSASAKDLNLGRGNCV 319

Query: 177 VFRDDDL-----KSGIGVFPLDDVGWYGDGILHLLDYPGFSSLFRPPPDWAMLH 225
            FRDD L      +G+GVF LDD       I  L +  GFS LF PPPDW  L 
Sbjct: 320 AFRDDGLGFNRVLNGMGVFRLDD-----GKISPLSECAGFSELFCPPPDWVGLQ 368