Miyakogusa Predicted Gene

Lj0g3v0154809.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154809.1 tr|G5BKU6|G5BKU6_HETGA DNA excision repair
protein ERCC-1 OS=Heterocephalus glaber GN=GW7_13342
PE=4,46.48,0.0000000001,Rad10,DNA repair protein rad10; no
description,NULL; seg,NULL; Q9FWD8_ORYSA_Q9FWD8;,DNA repair
prote,CUFF.9658.1
         (398 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g29730.1                                                       558   e-159
Glyma20g37570.1                                                       260   2e-69

>Glyma10g29730.1 
          Length = 398

 Score =  558 bits (1438), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/367 (75%), Positives = 295/367 (80%), Gaps = 15/367 (4%)

Query: 17  SSVVIRIPSYQEVVESSQARSTPPSLFVPSQTFSQAFAFIKSSEFYXXXXXXXXXXXXXX 76
           SSVVIRIPSYQEVVESSQA+STP SLFVPSQTFS+AFAF+KSS+FY              
Sbjct: 17  SSVVIRIPSYQEVVESSQAKSTPSSLFVPSQTFSEAFAFVKSSDFYSPPPKSRETGQSDA 76

Query: 77  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNAILVSHRQ-----KGNPLLKHIRNVKW 131
                                          RN+ILVSHRQ     KGNPLLKHIRNV+W
Sbjct: 77  PSSTSTPSPATAAASSTIPSSQN--------RNSILVSHRQCIILQKGNPLLKHIRNVRW 128

Query: 132 TFADVVCDYLLGQSSCAIYISLRYHLLHPDYLYYRIRELQKNFKLRXXXXXXXXXXXXKP 191
            FADVVCDY+LGQSSCA+Y+SLRYHLLHPDYLYYRIRELQKNFKLR            KP
Sbjct: 129 AFADVVCDYMLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVIKP 188

Query: 192 LLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHALTT 251
           LLEVTKTA+LHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTH+LTT
Sbjct: 189 LLEVTKTAMLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHSLTT 248

Query: 252 VRHVNKTDVVTLGTTFGSLSHIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQ 311
           VRHVNKTDVVTLGTTFGSLS+IMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQ
Sbjct: 249 VRHVNKTDVVTLGTTFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQ 308

Query: 312 AVPETSAQNKPASPDPLMRNNAESSSLIKDK--DVEDVSKRRKEEPELTVKSALSAAFAK 369
           A+PETS QNKPASP+  +RN AESSSLI+DK  D EDVSKRRK+EPE+TVKSALSAAFAK
Sbjct: 309 AIPETSVQNKPASPESSIRNKAESSSLIEDKQEDTEDVSKRRKKEPEVTVKSALSAAFAK 368

Query: 370 YSDRVGK 376
           YS RVGK
Sbjct: 369 YSGRVGK 375


>Glyma20g37570.1 
          Length = 314

 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/277 (55%), Positives = 177/277 (63%), Gaps = 56/277 (20%)

Query: 117 QKGNPLLKHIRNVKWTFADVVCDYLLGQSSCAIYISLRYHLLHPDYLYYRIRELQKNFKL 176
           QKGNPLLKHIRNV+W FADVVCDYLLGQSSCA+Y+SLRYHLLHPDYL+YRIR+LQKNFKL
Sbjct: 1   QKGNPLLKHIRNVRWAFADVVCDYLLGQSSCALYLSLRYHLLHPDYLFYRIRKLQKNFKL 60

Query: 177 RXXXXXXXXXXXXKPLLEVTKTALLHDCTLLCGW-----SLEECGRYLETI---KVYENK 228
           R            KPLLEVTKTALLHDCTLLCGW     +++ CG  L  I    +Y   
Sbjct: 61  RVVLCHVGVEDVIKPLLEVTKTALLHDCTLLCGWRKYHMTIKVCGCNLIKIVNVTMYVAT 120

Query: 229 PADI---------IQGQMDTDYLSR-----------LTHALTTVRHVNKTDVVTLGTTFG 268
           P  +         ++ Q    Y SR           LTHALTTVRHVNKTDVVTLGTTFG
Sbjct: 121 PGGMWPLLGNHKSLRKQACRHY-SRPNGYRLSIKGMLTHALTTVRHVNKTDVVTLGTTFG 179

Query: 269 SLSHIMGASMEDLARCPGI-GERKV---------------KRLFDTFHEPFKRVESSRQA 312
            L +IMGASMEDLARCPGI GERKV                 +++   +PF+R+ S    
Sbjct: 180 YLCNIMGASMEDLARCPGIVGERKVYYQWSSACLTLFMNPSSMWNPAGKPFQRLLS---- 235

Query: 313 VPETSAQNKPASPDPLMRNNAESSSLIKDK--DVEDV 347
              TS   +P S    +RNNAESSSLI+DK  D ED+
Sbjct: 236 --RTSQLVRPVSS---IRNNAESSSLIEDKHEDAEDL 267