Miyakogusa Predicted Gene

Lj0g3v0154439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154439.1 Non Chatacterized Hit- tr|C4WYI8|C4WYI8_TRIDB
Putative TdLSC28 protein (SMC6) (Fragment)
OS=Triticum,54.93,5e-16,STRUCTURAL MAINTENANCE OF CHROMOSOMES 6
SMC6,NULL; STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5,
,CUFF.9559.1
         (265 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g36430.1                                                       336   2e-92

>Glyma09g36430.1 
          Length = 1080

 Score =  336 bits (861), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/272 (66%), Positives = 213/272 (78%), Gaps = 12/272 (4%)

Query: 6   HAAERGLTSSSSVDEIGEAISEIQKKKDEEQVLLKNLQQKKHEAAGKADDLKTQFDKLCE 65
           + A+   T  SSVDE+ E ISEIQKK  +E+VLL+ L+QK+ EAAGKADDLK +FDKLCE
Sbjct: 726 YTAKNSATPLSSVDELIEEISEIQKKIKDEKVLLEGLRQKECEAAGKADDLKVKFDKLCE 785

Query: 66  STNGXXXXXXXXXXXXXXY------------HYDGVMKNKVLRDIQEAEEHNLVLTKRRE 113
           S NG                           HY+G+MKNKVL DI+EAEEH L LTK R+
Sbjct: 786 SANGEFASYEKAESELVEIEKEMDSAKKAKDHYEGIMKNKVLLDIEEAEEHYLELTKMRK 845

Query: 114 EFVEKASIICCVNELNSLGGCDGDTPEKISAQLEEVKQTLRRESPRYSESIDDLRMLYAK 173
           E VEKASIIC +NEL+SLGGC+G+TPE+ISAQLE + QT+RRES RYSESIDDLRMLY K
Sbjct: 846 ESVEKASIICSLNELDSLGGCEGNTPEQISAQLERLNQTIRRESQRYSESIDDLRMLYKK 905

Query: 174 KERKITKRQQVYKALRQKLDACERALKVRRNKFQTNASCVKRQLSWKFNTHLRRKGISGL 233
           KERKI KRQQVYK LRQKLDAC+RAL++R+ KFQ NA+ +K QLSWKFN HLR+KGISGL
Sbjct: 906 KERKIIKRQQVYKTLRQKLDACQRALELRKRKFQRNATYLKHQLSWKFNGHLRKKGISGL 965

Query: 234 IRVNYEKETLLIEVQMPQDASNKAVQDTRGLS 265
           I+VNYE +TL+IEVQMPQDASN+AV+DTRGLS
Sbjct: 966 IKVNYEDKTLMIEVQMPQDASNRAVRDTRGLS 997