Miyakogusa Predicted Gene

Lj0g3v0152109.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0152109.3 tr|G7KVF5|G7KVF5_MEDTR Homeobox-leucine zipper
protein HOX27 OS=Medicago truncatula GN=MTR_7g093430 ,45,0.000002,
,CUFF.9379.3
         (52 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g33100.1                                                        55   1e-08
Glyma09g16790.1                                                        49   9e-07

>Glyma19g33100.1 
          Length = 270

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 39/69 (56%), Gaps = 23/69 (33%)

Query: 1  MELALSLGDTPKPFT--------------------SPDPPVQLNLLPFTPVQRSQPSSYL 40
          MELALSLGDTPKPF+                    S DPPVQL+LLP TPV    PSS L
Sbjct: 1  MELALSLGDTPKPFSLPAKNDSVSFKIALGDDKRVSSDPPVQLDLLPSTPV---LPSSRL 57

Query: 41 QIPWLNQPF 49
          +IPWL+   
Sbjct: 58 RIPWLSDAL 66


>Glyma09g16790.1 
          Length = 327

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 40/86 (46%), Gaps = 39/86 (45%)

Query: 1  MELALSLGDTPKPFT-------------------------------------SPDPPVQL 23
          MELALSLGDT K FT                                     S DPPVQL
Sbjct: 1  MELALSLGDTSKSFTFLDKAVTLPPNKDPPGFCLAPSFAEKRSDSERGTASGSSDPPVQL 60

Query: 24 NLLPFTPVQRSQ--PSSYLQIPWLNQ 47
          +LLPF+PV R Q  P S+L+IPWL Q
Sbjct: 61 DLLPFSPVLRPQQHPPSHLRIPWLTQ 86