Miyakogusa Predicted Gene

Lj0g3v0151489.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151489.1 tr|B9GVV8|B9GVV8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_554914 PE=4
SV=1,53.16,0.00000000007,Tub,Tubby, C-terminal; no description,Tubby,
C-terminal; seg,NULL; Tubby C-terminal domain-like,Tubb,CUFF.9317.1
         (342 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g44890.1                                                       397   e-110

>Glyma13g44890.1 
          Length = 356

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/264 (73%), Positives = 218/264 (82%), Gaps = 16/264 (6%)

Query: 69  TDRVLKPSSLQFCMKMNDPLDSHHSSTTSLNIWDFSDSEAAPASSWSTLPNKSLICRPLP 128
           TD +LKP SL+             S + +LNIWD+SDSE+ PASSWSTL NKSLICRPLP
Sbjct: 59  TDMILKPCSLE-------------SQSLNLNIWDYSDSESGPASSWSTLANKSLICRPLP 105

Query: 129 VDIGRCTCVIVKEATPQGLSGGTFFSLYTYEGQGRQNRKLAVALHKRRNGRSHFTVAQNL 188
           +DIG CTC IV E  PQGLSGGTFFSLYT EG GRQNRKLAVA HKRRNGRSHF +AQNL
Sbjct: 106 LDIGSCTCFIVNEPPPQGLSGGTFFSLYTNEGHGRQNRKLAVAHHKRRNGRSHFILAQNL 165

Query: 189 KGLMSNSDESFLGTVTANLMGSKYCIWDQGHRHRSHSKQPKLPLSVVRYIPTIATCTGSH 248
           +GL+S+SD+SFLGTVTANL+GSKY IWDQG+ H S +KQPK PL+VV YIPT+ TCTGSH
Sbjct: 166 RGLLSHSDDSFLGTVTANLIGSKYHIWDQGYLHNSRAKQPKPPLAVVTYIPTVTTCTGSH 225

Query: 249 RSMRAYIPKHQSMSLKNTTQAQHIKGLPMNWEGKLDKVHQLFTRVPLYNKISKQLELDYR 308
           RSMRAYIPKHQ+MSLK+TTQ QHIKGLP NWEGK DKVHQLF++VPLYNKISKQ ELD+R
Sbjct: 226 RSMRAYIPKHQTMSLKSTTQVQHIKGLPFNWEGKPDKVHQLFSKVPLYNKISKQYELDFR 285

Query: 309 D-KGRP--ELRIQRSAKNFQLTLE 329
           D KG+     RIQRS KNFQLTLE
Sbjct: 286 DNKGKAGGGFRIQRSVKNFQLTLE 309