Miyakogusa Predicted Gene
- Lj0g3v0150479.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0150479.2 tr|B9HKE2|B9HKE2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766427 PE=4 SV=1,46.67,2e-18,Ring
finger,Zinc finger, RING-type; zf-C3HC4,Zinc finger, C3HC4 RING-type;
coiled-coil,NULL; no desc,CUFF.9242.2
(468 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma10g30510.1 213 3e-55
Glyma20g36830.1 212 6e-55
Glyma19g34440.1 189 7e-48
Glyma03g31610.1 186 7e-47
Glyma02g15980.1 169 5e-42
Glyma10g03780.1 167 3e-41
Glyma10g32360.1 109 7e-24
Glyma20g35250.1 76 7e-14
>Glyma10g30510.1
Length = 432
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 107/131 (81%)
Query: 23 LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
L CM CPLC N FK+ATTIS CLHTFCRKCIYEKLSDEE + CPVCNIDLGCLP+EKLR
Sbjct: 14 LRPCMTCPLCHNFFKDATTISTCLHTFCRKCIYEKLSDEETDCCPVCNIDLGCLPVEKLR 73
Query: 83 PDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKS 142
PDHNL DIRA +FPF+R+KI+ QEV+ SIS P K+KERSLSS VVSAPKVS G TGK
Sbjct: 74 PDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKR 133
Query: 143 IKTGTRKAAAF 153
K TRKAAA
Sbjct: 134 TKNSTRKAAAL 144
>Glyma20g36830.1
Length = 372
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 108/131 (82%)
Query: 23 LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
L CM CPLC FK+ATTISLCLHTFCRKCIYEKLSDEEM+ CPVC+IDLGCLP+EKLR
Sbjct: 9 LRPCMTCPLCHKFFKDATTISLCLHTFCRKCIYEKLSDEEMDCCPVCHIDLGCLPVEKLR 68
Query: 83 PDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKS 142
PDHNL DIRA +FPF+R+KI+ QEV+ SIS P K+KERSLSS VVSAPKVS G TGK
Sbjct: 69 PDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKR 128
Query: 143 IKTGTRKAAAF 153
K TRKAAA
Sbjct: 129 TKNSTRKAAAL 139
>Glyma19g34440.1
Length = 428
Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 105/131 (80%), Gaps = 1/131 (0%)
Query: 23 LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
+ ACM CPLC LF+EATTIS CLHTFCRKCIY+K++DEE+E CP+CNIDLGC+P+EKLR
Sbjct: 13 IAACMTCPLCGKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNIDLGCVPLEKLR 72
Query: 83 PDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKS 142
PDH+LQD+RA VFP + RK++ EVV S+ P ++KERSLSS VVS P+VST +TG+
Sbjct: 73 PDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSTQATMTGRR 132
Query: 143 IKTGTRKAAAF 153
K TRKA+
Sbjct: 133 TKP-TRKASGL 142
>Glyma03g31610.1
Length = 413
Score = 186 bits (471), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 102/127 (80%), Gaps = 1/127 (0%)
Query: 27 MKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLRPDHN 86
M CPLC LF+EATTIS CLHTFCRKCIY+K++DEE+E CP+CNIDLGC+P+EKLRPDH+
Sbjct: 1 MTCPLCNKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNIDLGCVPLEKLRPDHS 60
Query: 87 LQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKSIKTG 146
LQD+RA VFP + RK++ EVV S+ P ++KERSLSS VVS P+VST +TG+ K
Sbjct: 61 LQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSTQAAMTGRRTKP- 119
Query: 147 TRKAAAF 153
TRKA+
Sbjct: 120 TRKASGL 126
>Glyma02g15980.1
Length = 428
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 99/131 (75%), Gaps = 1/131 (0%)
Query: 23 LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
+ ACM CPLC+ KEAT ISLCLHTFCRKCIY+K++DEE+E CPVCNIDLG +P+EK+R
Sbjct: 12 IAACMTCPLCKKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMR 71
Query: 83 PDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKS 142
PD+ LQD+R +FPF++RK + V S+ P ++KERSLSS VVS P+V T + +TG+
Sbjct: 72 PDNILQDLRNKIFPFKKRKEKAPVSVSSVLLPARRKERSLSSLVVSTPRVCTQSTMTGRR 131
Query: 143 IKTGTRKAAAF 153
K RKA+
Sbjct: 132 TKPA-RKASGL 141
>Glyma10g03780.1
Length = 429
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 97/131 (74%), Gaps = 1/131 (0%)
Query: 23 LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
+ ACM CPLC KEAT ISLCLHTFCRKCIY+K++DEE+E CPVCNIDLG +P+EK+R
Sbjct: 14 IAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKIADEELENCPVCNIDLGIVPLEKMR 73
Query: 83 PDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKS 142
PD+ LQD+R +FPF++RK + V S P ++KERSLSS VVS P+V T + +TG+
Sbjct: 74 PDNILQDLRNKIFPFKKRKEKAPVSVSSALLPARRKERSLSSLVVSTPRVCTQSTMTGRR 133
Query: 143 IKTGTRKAAAF 153
K RKA+
Sbjct: 134 TKPA-RKASGL 143
>Glyma10g32360.1
Length = 428
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 60/83 (72%)
Query: 23 LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
+ AC+ CPLC F+ ATTIS C H+FCR+C+ +KL DE+++ CP+CN DLGC P +KLR
Sbjct: 27 VSACVTCPLCNKFFRNATTISECCHSFCRECVDKKLIDEKLKHCPICNRDLGCSPHDKLR 86
Query: 83 PDHNLQDIRAIVFPFERRKIEVQ 105
PD LQD+R +FP E + V+
Sbjct: 87 PDPCLQDLRDKIFPLEEQNASVK 109
>Glyma20g35250.1
Length = 357
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 46 LHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLRPDHNLQDIRAIVFPFERRKIEVQ 105
L T CR+CI +KL DE+++ CP+CN DLGC P++KLR D LQD+R +FPFE + V+
Sbjct: 19 LTTVCRECIDKKLIDEKLKHCPICNRDLGCSPLDKLRSDPCLQDLRDKIFPFEEQNASVK 78
Query: 106 EVVPSISSPGKKKERSLSSFVVSA 129
+ +K+ SLSS +A
Sbjct: 79 LNI-------YRKKNSLSSLKKNA 95