Miyakogusa Predicted Gene

Lj0g3v0150119.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0150119.1 Non Chatacterized Hit- tr|B8B4X2|B8B4X2_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,25,0.0000004,Chaperone J-domain,Heat shock protein DnaJ,
N-terminal; DnaJ,Heat shock protein DnaJ, N-terminal; DN,CUFF.9204.1
         (159 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g21060.1                                                       110   5e-25

>Glyma06g21060.1 
          Length = 764

 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 67/96 (69%), Gaps = 10/96 (10%)

Query: 14 VVSTIRAYALPLIFFAGAMFYQLVAIPNAFPPSRYDVLQIERYSSIDAVQEAYDKLESKW 73
          + S +RAY LP++ FAGAMFYQL  IPNAFPPS YDVLQIE YSS++ V+EAYDKLESK 
Sbjct: 1  MASIVRAYTLPILLFAGAMFYQLFLIPNAFPPSHYDVLQIESYSSVEKVKEAYDKLESKC 60

Query: 74 ----------NSDVEVSDIHEFIKIRYAYELLTNPL 99
                    NS VEV DIHEF+K+ Y    L N L
Sbjct: 61 LMKLVTLSFRNSAVEVFDIHEFLKVSYEAIYLPNYL 96



 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 59/74 (79%), Gaps = 7/74 (9%)

Query: 86  IKIRYAYELLTNPLWKRDYDIFGIDEQLHVVESARKRYAGKNISQLDFPLLHSPSGSFDH 145
           ++IRYAYELLTNPLWKRDYDIFGIDEQLH+VESA KRYAGK+IS+LDFPLL +P      
Sbjct: 162 LQIRYAYELLTNPLWKRDYDIFGIDEQLHIVESASKRYAGKHISELDFPLLQAP------ 215

Query: 146 SSKVTVSDFLSAIP 159
            S +T SDF    P
Sbjct: 216 -SVITASDFQYIFP 228