Miyakogusa Predicted Gene

Lj0g3v0149999.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149999.3 tr|F2CUH7|F2CUH7_HORVD DNA-directed RNA
polymerase OS=Hordeum vulgare var. distichum PE=2
SV=1,27.01,1e-17,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; DNA-DIRECTED RNA POLYMERASE,NULL;,CUFF.9209.3
         (421 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g42480.1                                                       448   e-126
Glyma11g02920.1                                                       432   e-121
Glyma15g37710.1                                                        69   1e-11

>Glyma01g42480.1 
          Length = 1376

 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/343 (65%), Positives = 267/343 (77%), Gaps = 11/343 (3%)

Query: 80  HFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSG 139
           HFG IKFP  I+HPYF+ E A ILNKICP CKSIR     KG + +   K+ NDC YCS 
Sbjct: 1   HFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHK--SKGARLIYGTKRSNDCNYCS- 57

Query: 140 ISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEEESL 199
                YP+M+FRVS N+L R   II E+    + KKTLG  + AD+W+FIP  +++EE+ 
Sbjct: 58  ----VYPSMQFRVSSNDLFRRTAIIVEVK---ASKKTLGTEIPADFWNFIPCDAQQEENY 110

Query: 200 VNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKL 258
           VNRR LS  QV++LL+DVDPDFIEKY+PRK+LL LN FPVTPN HRVTE  +  S+G +L
Sbjct: 111 VNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRL 170

Query: 259 SFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNS 318
           SFDDRTR+CKKLVDFRG A ELSS V++ L +SKLNPDKTP+++F ++QQRK+GENA NS
Sbjct: 171 SFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNS 230

Query: 319 SGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLD 378
           SGLRW+KDVVLGKRND SFRTVVVGDPDL LSEIG+PC IAESLQVS YVNR+N++ LL 
Sbjct: 231 SGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLY 290

Query: 379 CCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
           CCEL LLEKG   VCRKG  V LYKK+DLQIGD  YRPL DGD
Sbjct: 291 CCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYRPLADGD 333


>Glyma11g02920.1 
          Length = 1385

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/434 (53%), Positives = 282/434 (64%), Gaps = 59/434 (13%)

Query: 38  IRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFIS 97
           +  I+ LEI AAGQV  S LG PN+S+ C TCG+ DK+ CEGHFG IKFP  I+HPYF+S
Sbjct: 1   MENIAVLEINAAGQVTGSSLGFPNASDECATCGSKDKRFCEGHFGVIKFPTPILHPYFMS 60

Query: 98  EAAEILNKICPACKSIR------------------------------CDL--------LI 119
           E A ILNKICP CKSIR                              C L         +
Sbjct: 61  EIAHILNKICPVCKSIRHKSKVIYLLLVPNTGILSFYELASMDFIITCFLPPIYSSIVFL 120

Query: 120 KGVKFLSVDKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQ 179
           +GV+ +   K+ NDC YCS      YP+MKFRVS N+L R   II E+    + KKTLG 
Sbjct: 121 QGVRLIYGTKRSNDCNYCSA-----YPSMKFRVSSNDLFRRTAIIVEVK---ASKKTLGT 172

Query: 180 RLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPV 238
            + ADYW+FIP  +++EE+ VNRR LS +QV +LL+ VDPDFIEKY+PRK+LL LN FPV
Sbjct: 173 EIPADYWNFIPCDAQQEENYVNRRVLSPAQVLNLLNGVDPDFIEKYIPRKNLLYLNCFPV 232

Query: 239 TPNGHRVTEFSHRPSN-----------GPKLSFDDRTRACKKLVDFRGPAVELSSHVINS 287
           TPN HRVTE  +  S            G       R   C ++   R  AV L+  +  S
Sbjct: 233 TPNCHRVTEVPYAISIFNIIIFINCHMGTPNELSSRVLDCLRISKARCSAV-LAFRLCFS 291

Query: 288 LSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDL 347
               +LNPDKTP+++F ++QQRK+GENACNSSGLRW+KDVVLGKRND S RTVVVGDPDL
Sbjct: 292 FDEMQLNPDKTPNSIFADIQQRKIGENACNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDL 351

Query: 348 ALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDL 407
            LSE+G+PC IAESLQVS YVNR+N++ LL CCELRLLEKG   VCR G  V LYKK+DL
Sbjct: 352 ELSEVGIPCHIAESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVCRNGSKVHLYKKEDL 411

Query: 408 QIGDLLYRPLTDGD 421
           QIGD +YRPL DGD
Sbjct: 412 QIGDKIYRPLADGD 425


>Glyma15g37710.1 
          Length = 2101

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 17  EHNMPS----GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
           E N PS    G +  IKF + T ++I T  IS   I  A Q+    LGLP     C +CG
Sbjct: 2   EDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCG 61

Query: 71  TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
           T++   CEGHFG I+ P  I HP  IS+   +L+ +C  C  +R
Sbjct: 62  TSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLR 105