Miyakogusa Predicted Gene
- Lj0g3v0146989.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0146989.1 Non Chatacterized Hit- tr|D8S066|D8S066_SELML
Putative uncharacterized protein OS=Selaginella
moelle,34.74,5e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL; Nucleopor_Nup85,Nucleoporin
Nup85-l,gene.g11122.t1.1
(197 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g27490.1 237 8e-63
>Glyma17g27490.1
Length = 698
Score = 237 bits (604), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 131/247 (53%), Positives = 152/247 (61%), Gaps = 64/247 (25%)
Query: 1 MPSDTVGNGVLVPFSGEGSDSVAVYPLNHGLSLPISRVAISWSRGNSLRVSLFAEPSATS 60
MPSDTVGN LVPF+G+ AVYPL+HGL+ PISR++ISW+RG+SLR+SLFA
Sbjct: 1 MPSDTVGNVALVPFTGDSPP--AVYPLHHGLAPPISRLSISWARGSSLRLSLFA------ 52
Query: 61 PDSQASGAKVVEVKLSGEDPEISDSNWRRIAYGSVTPFALLQXXXXXXXXXXXXXXXYHV 120
+ AKVVEVKL+GED EI D++WRRIAYGSV PFALLQ Y
Sbjct: 53 ----GAAAKVVEVKLAGEDSEIPDAHWRRIAYGSVAPFALLQSRRSSLSALLKTPSPYRS 108
Query: 121 DWWEHVLEYSKDIASLLGGPK--------------------------------------- 141
DWWEHVL+YSK+I SLLGGPK
Sbjct: 109 DWWEHVLQYSKEIGSLLGGPKLPASPIIEDPNVIAKRGEEPTSLKAAWELIEIFYVDKQS 168
Query: 142 -------------DFDSLFTSTHETIHGKLVNFQKELVNIQVIEDDPRYWEVMSSALSVG 188
D+ SLFTSTHETIHGKLV+FQKELVNIQVIE+DPRYW+++SSALSVG
Sbjct: 169 QAWLPERLVDWLADYASLFTSTHETIHGKLVDFQKELVNIQVIEEDPRYWDLLSSALSVG 228
Query: 189 WLDIVVS 195
WLDIVV
Sbjct: 229 WLDIVVK 235