Miyakogusa Predicted Gene

Lj0g3v0146989.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146989.1 Non Chatacterized Hit- tr|D8S066|D8S066_SELML
Putative uncharacterized protein OS=Selaginella
moelle,34.74,5e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL; Nucleopor_Nup85,Nucleoporin
Nup85-l,gene.g11122.t1.1
         (197 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g27490.1                                                       237   8e-63

>Glyma17g27490.1 
          Length = 698

 Score =  237 bits (604), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 131/247 (53%), Positives = 152/247 (61%), Gaps = 64/247 (25%)

Query: 1   MPSDTVGNGVLVPFSGEGSDSVAVYPLNHGLSLPISRVAISWSRGNSLRVSLFAEPSATS 60
           MPSDTVGN  LVPF+G+     AVYPL+HGL+ PISR++ISW+RG+SLR+SLFA      
Sbjct: 1   MPSDTVGNVALVPFTGDSPP--AVYPLHHGLAPPISRLSISWARGSSLRLSLFA------ 52

Query: 61  PDSQASGAKVVEVKLSGEDPEISDSNWRRIAYGSVTPFALLQXXXXXXXXXXXXXXXYHV 120
                + AKVVEVKL+GED EI D++WRRIAYGSV PFALLQ               Y  
Sbjct: 53  ----GAAAKVVEVKLAGEDSEIPDAHWRRIAYGSVAPFALLQSRRSSLSALLKTPSPYRS 108

Query: 121 DWWEHVLEYSKDIASLLGGPK--------------------------------------- 141
           DWWEHVL+YSK+I SLLGGPK                                       
Sbjct: 109 DWWEHVLQYSKEIGSLLGGPKLPASPIIEDPNVIAKRGEEPTSLKAAWELIEIFYVDKQS 168

Query: 142 -------------DFDSLFTSTHETIHGKLVNFQKELVNIQVIEDDPRYWEVMSSALSVG 188
                        D+ SLFTSTHETIHGKLV+FQKELVNIQVIE+DPRYW+++SSALSVG
Sbjct: 169 QAWLPERLVDWLADYASLFTSTHETIHGKLVDFQKELVNIQVIEEDPRYWDLLSSALSVG 228

Query: 189 WLDIVVS 195
           WLDIVV 
Sbjct: 229 WLDIVVK 235