Miyakogusa Predicted Gene

Lj0g3v0146199.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146199.1 Non Chatacterized Hit- tr|I1LKG9|I1LKG9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,37.1,0.041,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; NUCLEAR
PORE GLYCOPROTEIN P62-RELATED,Nucleoporin NSP1/N,CUFF.8917.1
         (619 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g14440.1                                                       335   6e-92
Glyma11g16410.1                                                       224   2e-58
Glyma11g16390.1                                                       123   6e-28

>Glyma01g14440.1 
          Length = 287

 Score =  335 bits (860), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 167/178 (93%), Positives = 168/178 (94%)

Query: 412 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDHRILRNRDVLLRLEIAVAK 471
           PKLPSEITGKTVEEIIKEWNAELQERTGKF+KQANAIAEWD RIL NRDVLLRLEI VAK
Sbjct: 26  PKLPSEITGKTVEEIIKEWNAELQERTGKFKKQANAIAEWDRRILNNRDVLLRLEIEVAK 85

Query: 472 VVETQSNLERQLELIETHQQEADKALQSMEEEAERIYKDERGLLLDDEAASTRDAMYEQS 531
           VVETQSNLERQLELIETHQQE DKALQSMEEEAE IYKDERGLLLDDEAASTRDAMYEQS
Sbjct: 86  VVETQSNLERQLELIETHQQEVDKALQSMEEEAECIYKDERGLLLDDEAASTRDAMYEQS 145

Query: 532 ELIERELEHMTEQIKSIIQSLNSNQGGELDAADGMNPLDAVVRILNNQLTSLMWIDEK 589
           ELIERELE MTEQIKSIIQSLNSNQGGE D  DGM PLDAVVRILNNQLTSLMWIDEK
Sbjct: 146 ELIERELEQMTEQIKSIIQSLNSNQGGEHDTLDGMTPLDAVVRILNNQLTSLMWIDEK 203


>Glyma11g16410.1 
          Length = 197

 Score =  224 bits (571), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/127 (88%), Positives = 117/127 (92%)

Query: 493 ADKALQSMEEEAERIYKDERGLLLDDEAASTRDAMYEQSELIERELEHMTEQIKSIIQSL 552
            DKALQSMEEEAE IYKDERGLL DDEAASTRDAMYEQSELIERELE MTEQIKS+IQSL
Sbjct: 71  VDKALQSMEEEAECIYKDERGLLHDDEAASTRDAMYEQSELIERELEQMTEQIKSVIQSL 130

Query: 553 NSNQGGELDAADGMNPLDAVVRILNNQLTSLMWIDEKAEEFSSRIQKLSNQGSASDRELT 612
           NSNQGGE D  DGM PLDAVVRILNNQLTSLMWIDEKAEEFSSRIQKL+N GSA+DRELT
Sbjct: 131 NSNQGGEHDTLDGMTPLDAVVRILNNQLTSLMWIDEKAEEFSSRIQKLANPGSATDRELT 190

Query: 613 GPGMWMS 619
           G G+WMS
Sbjct: 191 GLGIWMS 197


>Glyma11g16390.1 
          Length = 612

 Score =  123 bits (309), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/55 (96%), Positives = 53/55 (96%)

Query: 412 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDHRILRNRDVLLRLE 466
           PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWD RIL NRDVLLRLE
Sbjct: 558 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDRRILNNRDVLLRLE 612