Miyakogusa Predicted Gene

Lj0g3v0142159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0142159.1 tr|A9SI59|A9SI59_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_165067,42,1e-18,coiled-coil,NULL; seg,NULL,CUFF.8683.1
         (198 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g13300.1                                                       116   1e-26
Glyma18g28350.1                                                        96   3e-20
Glyma03g13310.1                                                        73   2e-13
Glyma18g28380.1                                                        55   6e-08

>Glyma03g13300.1 
          Length = 128

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 75/119 (63%), Gaps = 1/119 (0%)

Query: 1   MNTTLSPSASTTCXXXXXXXXXXXXXXITVPCSSKSTRIELHCKRGSQYAGVRCNCSFRX 60
           MNT LSPS++                   V  SS S+ IEL  KRGSQ  G+RCNCS   
Sbjct: 1   MNTVLSPSSAFPTLSKTYVSFGPLFSSFAV-PSSSSSHIELPRKRGSQNTGLRCNCSIWP 59

Query: 61  XXXXXXXXXXXXRTVLDAFFLGKAVAEALNERIESTVGEFLSTVGRLQAEQQKQVQDFQ 119
                       R++LDAFFLGKAVAEALNERIESTVGE LSTVGRLQAEQQKQVQDFQ
Sbjct: 60  GGPGSGDSDSSNRSILDAFFLGKAVAEALNERIESTVGEILSTVGRLQAEQQKQVQDFQ 118


>Glyma18g28350.1 
          Length = 69

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 50/69 (72%)

Query: 46  GSQYAGVRCNCSFRXXXXXXXXXXXXXRTVLDAFFLGKAVAEALNERIESTVGEFLSTVG 105
           GSQ  G+RC CS               R+VLDAFFLGKAVAEALNERIESTVGE LSTVG
Sbjct: 1   GSQNTGLRCKCSIWPGGPGSGDSDSSNRSVLDAFFLGKAVAEALNERIESTVGEILSTVG 60

Query: 106 RLQAEQQKQ 114
           RLQAEQQKQ
Sbjct: 61  RLQAEQQKQ 69


>Glyma03g13310.1 
          Length = 1279

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 50/78 (64%)

Query: 120  EEVLDXXXXXXXXXXXXXXXXQGLISKSAAETKVADSPSSRTSNSATDPVISVQITDASE 179
            EEVL+                QG ISKSA ETKV DS +S+TSNSAT PV SVQ TDASE
Sbjct: 1202 EEVLERAKKSKENAAREAMEAQGFISKSAVETKVTDSTTSKTSNSATGPVTSVQSTDASE 1261

Query: 180  TYTEPTIKEDPALSSSDD 197
            T +EP  +E+P  S+SD+
Sbjct: 1262 TDSEPAKEEEPTSSTSDE 1279


>Glyma18g28380.1 
          Length = 61

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 40/58 (68%)

Query: 141 QGLISKSAAETKVADSPSSRTSNSATDPVISVQITDASETYTEPTIKEDPALSSSDDE 198
           QGLISKS  ETKV  S +S T NS+T+PV SVQ T ASET +E    E+P  SS+ DE
Sbjct: 4   QGLISKSGVETKVLYSITSDTLNSSTNPVTSVQSTVASETISELAKGEEPTTSSTSDE 61