Miyakogusa Predicted Gene

Lj0g3v0139599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0139599.1 tr|A9S7Q9|A9S7Q9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,49.02,1e-16,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.8506.1
         (115 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g22260.1                                                       202   5e-53

>Glyma09g22260.1 
          Length = 1616

 Score =  202 bits (515), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 101/105 (96%)

Query: 11  DRMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLTSAGVIDLLPGPNLQSAERLVATR 70
           +RMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWL SAGV DLLPG NLQ AERL+ATR
Sbjct: 609 ERMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLNSAGVADLLPGANLQQAERLMATR 668

Query: 71  EVNPLPMSLLSGFSMNLCLKLSYQMEDSLFSGQVVPSIAMVETYT 115
           EV+PLPMSLLSGFS+NLC+KLSYQMEDSLFSGQV+PSIAMVETYT
Sbjct: 669 EVSPLPMSLLSGFSINLCVKLSYQMEDSLFSGQVIPSIAMVETYT 713