Miyakogusa Predicted Gene

Lj0g3v0132789.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132789.2 Non Chatacterized Hit- tr|E1Z4R0|E1Z4R0_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,28.33,1e-18,HYPOTHETICAL PROTEIN,NULL; WD40 REPEAT
FAMILY,NULL; WD40 repeat-like,WD40-repeat-containing domain;
,CUFF.8100.2
         (339 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g13930.1                                                       166   4e-41

>Glyma11g13930.1 
          Length = 112

 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 97/107 (90%)

Query: 228 NDSYVPTDVSYLRKPSWLSTCSIYMTGSPCNSGIHLLDFYPSTSSPSHVDYRENIEEFNG 287
           NDSY+P D+SYLRKPSWLST SIY+ GS  + GIHLLDFYPST+SPSHVDY+E+++E + 
Sbjct: 1   NDSYIPADLSYLRKPSWLSTGSIYLIGSSSDCGIHLLDFYPSTNSPSHVDYKEDMQENSR 60

Query: 288 QNKQNNRNRFISLSEEVISCAAHPLYNAIVAGTKESSLLVISQRRES 334
           ++ ++N+NRFISLSE VISCAAHPLYNAIVAGTK++SLLVISQR+ES
Sbjct: 61  RHNRSNQNRFISLSEGVISCAAHPLYNAIVAGTKKTSLLVISQRQES 107