Miyakogusa Predicted Gene
- Lj0g3v0132489.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0132489.1 tr|A9RVJ9|A9RVJ9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_161310,29.95,7e-17,RRM_1,RNA recognition motif domain;
RRM_5,NULL; SPOC,Spen paralogue and orthologue SPOC,
C-terminal;,CUFF.8071.1
(737 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g03840.1 760 0.0
Glyma20g10360.1 460 e-129
Glyma20g10380.1 249 1e-65
Glyma11g13490.1 154 3e-37
Glyma12g05490.1 151 2e-36
Glyma13g42060.1 149 2e-35
Glyma20g10350.1 127 4e-29
Glyma15g03330.1 111 4e-24
>Glyma13g03840.1
Length = 727
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/593 (67%), Positives = 442/593 (74%), Gaps = 11/593 (1%)
Query: 122 DKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXXXXXXXXXXXEPSEVL 181
DKP LRGS P S RE RG H SPEPHY EPSEVL
Sbjct: 2 DKPSAMQHDEDYSWDERNSILRGS-PFSQREFRGYHGSPEPHYSDKSKLGDKNPEPSEVL 60
Query: 182 WVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLTSACRARDNLRGKLFG 241
W+GFPAQLKVEESILR+AFSPFGEI KITTF GRSYAFVRFRSLTSAC ARD+L+GKLFG
Sbjct: 61 WIGFPAQLKVEESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACSARDDLKGKLFG 120
Query: 242 NPRVHICFAKXXXXXXXXXXXXXXXXXXPLYKPRDRDGSSENLILDRSFGGDRNISSPNL 301
NPRVHICFAK P+YK R DGSSENL DRSF D NI SPN
Sbjct: 121 NPRVHICFAKSETGSSNSERRSFNGPRSPIYKSRGHDGSSENLRQDRSFNADHNIGSPNH 180
Query: 302 YRNRDSGDSGSYDFNLRXXXXXXXXXXXXEQRNIGQKGTSLGAPHEFYGHINSPPRERNV 361
+RN DS YD N + E R +G+KG +LG E Y H+NSP RER+
Sbjct: 181 FRN---WDSDPYDHN-KSGSSWDSGTNTYEPRKVGEKGRTLGVSQEIYEHMNSPSRERH- 235
Query: 362 HLGDFPQKFPQRGAFFEDQQAMPEDIPYLHEAKRLRTGPSSPEGELPEYPFSEFERQKHV 421
H+GDFP +FPQ+G F ED +A+P D+PYLHEAKRL+TG E ELPEYPF+E ER + V
Sbjct: 236 HVGDFPLRFPQKGEFTEDPRALP-DLPYLHEAKRLKTGSPPLERELPEYPFTELERHRRV 294
Query: 422 FPRLLPDFPQREHFDQSFDSGNFAYRQTLDHRPNSPLAPLDNRHEGWKPYDSFPMGPGTL 481
FPRLL D P + FD+ FD+GNFAY QTLD PNSPL LD RHEG KPYDSF MGPG L
Sbjct: 295 FPRLLSDLPPHKPFDKGFDTGNFAYGQTLDQPPNSPLPRLD-RHEGRKPYDSFQMGPGAL 353
Query: 482 NSQSKFVEKKIFTPEPDNSSVSEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCT 541
QS +VEKK FTPE D+SS++EWKWEGTIAKGGTPVC ARCFPVGKVLD++LP+FLDCT
Sbjct: 354 --QSTYVEKKRFTPESDSSSLTEWKWEGTIAKGGTPVCCARCFPVGKVLDMMLPEFLDCT 411
Query: 542 ARTSLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFL 601
A+T LDML+KHYYQAVGVWVVFFVPGSDAD+E YNEFMHYLEEKQRAAVAKLDDKTT+FL
Sbjct: 412 AKTGLDMLSKHYYQAVGVWVVFFVPGSDADMECYNEFMHYLEEKQRAAVAKLDDKTTLFL 471
Query: 602 VPPSEFSEKVLKVPGKLSISGVILRLEYPTLNHGPMPIEGVMKNENLLSYNENAFNPNSS 661
VPPSEFSEKVLKVPG+LSISGVILRLE P LNHGP I+ M N+NLLSYNEN + S+
Sbjct: 472 VPPSEFSEKVLKVPGRLSISGVILRLENPDLNHGPEHIQREMTNKNLLSYNENILHLKST 531
Query: 662 FPSVRIPP-PSISEYGNSGISNHSFLGNKFPAAPSVSDSARALVSMPESHDDR 713
FPSVR+P PSI E GNSGISN SFLGNKF AAPSVSDSARA+ SM E HD+R
Sbjct: 532 FPSVRVPTFPSIPEMGNSGISNLSFLGNKFAAAPSVSDSARAVASMSEFHDER 584
>Glyma20g10360.1
Length = 395
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/394 (62%), Positives = 280/394 (71%), Gaps = 13/394 (3%)
Query: 141 ALRGSSPVSNREHRGRHDSPEPHYXXXXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAF 200
ALRGS P S RE RG H SPE HY EPSEVLW+GFPAQLKV+ESILR+AF
Sbjct: 15 ALRGS-PFSQREFRGHHGSPELHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILRKAF 73
Query: 201 SPFGEIEKITTFSGRSYAFVRFRSLTSACRARDNLRGKLFGNPRVHICFAKXXXXXXXXX 260
SPFGEI KITTF GRSYAFVRFRSLTSACRARD+L+GKLFGNPRVHICFAK
Sbjct: 74 SPFGEIVKITTFPGRSYAFVRFRSLTSACRARDDLKGKLFGNPRVHICFAKSETGSSNSE 133
Query: 261 XXXXXXXXXPLYKPRDRDGSSENLILDRSFGGDRNISSPNLYRNRDSGDSGSYDFNLRXX 320
P+YK RDGSSENL DRSF DRNI SPN + DS YD +
Sbjct: 134 RRSFNGPRSPIYKSSGRDGSSENLRQDRSFNADRNIGSPNHF---GIWDSDPYD---QRG 187
Query: 321 XXXXXXXXXXEQRNIGQKGTSLGAPHEFYGHINSPPRERNVHLGDFPQKFPQRGAFFEDQ 380
EQR +G+KG +LG E Y H+NSP RER+ H+G+ PQ+F Q+G FFED
Sbjct: 188 SSWTGGTNTFEQRKVGEKGRTLGVSQEIYEHMNSPSRERH-HVGNVPQRFSQKGEFFEDP 246
Query: 381 QAMPEDIPYLHEAKRLRTGPSSPEGELPEYPFSEFERQKHVFPRLLPDFPQREHFDQSFD 440
+A+P D YLHEAKR++ G E E+PEYPF+E+ERQ+ VFPR L D P E FD+ FD
Sbjct: 247 RALP-DFSYLHEAKRMKAGSPPLEREIPEYPFTEYERQRRVFPR-LSDLPPHEPFDKGFD 304
Query: 441 SGNFAYRQTLDHRPNSPLAPLDNRHEGWKPYDSFPMGPGTLNSQSKFVEKKIFTPEPDNS 500
+GNF Y QTLDH PNSPL LD RHEGWKPYDSF MGP L QS +VEKK FTPE D+S
Sbjct: 305 AGNFTYDQTLDHPPNSPLPRLD-RHEGWKPYDSFQMGPSAL--QSTYVEKKGFTPEQDSS 361
Query: 501 SVSEWKWEGTIAKGGTPVCRARCFPVGKVLDILL 534
S++EWKWEGTIAKGGTPVCRARCFPVGKVLD++L
Sbjct: 362 SLTEWKWEGTIAKGGTPVCRARCFPVGKVLDMML 395
>Glyma20g10380.1
Length = 355
Score = 249 bits (635), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/190 (66%), Positives = 145/190 (76%), Gaps = 27/190 (14%)
Query: 548 MLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEF 607
ML+KHYYQAVGVWVVFFVPGSDAD++ YNEFMHYLEEK+RAAV+KLDDKTT+FLVPPSEF
Sbjct: 1 MLSKHYYQAVGVWVVFFVPGSDADMQCYNEFMHYLEEKKRAAVSKLDDKTTLFLVPPSEF 60
Query: 608 SEKVLKVPGKLSISGVILRLEYPTLNHGPMPIEGVMKNENLLSYNENAFNPNSSFPSVRI 667
SEK+LKVPG+LSISGVILRLE P LNHGP I+ M NENLLSYNEN +P SSFPSVR+
Sbjct: 61 SEKILKVPGRLSISGVILRLENPGLNHGPEHIQREMTNENLLSYNENILHPKSSFPSVRV 120
Query: 668 PPPSISEYGNSGISNHSFLGNKFPAAPSVSDSARALVSMPESHDDRSRSYPPLPPQTSGP 727
P +PS+S+ RA+ ESHDDRSR+YP + +TSGP
Sbjct: 121 P-----------------------TSPSISEMTRAVA---ESHDDRSRNYP-VQQRTSGP 153
Query: 728 NWSSHNLQNF 737
NWSS NLQNF
Sbjct: 154 NWSSQNLQNF 163
>Glyma11g13490.1
Length = 942
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 104/170 (61%), Gaps = 15/170 (8%)
Query: 507 WEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVP 566
W G IAKGGTPVCRARC P+GK + LPD +DC+ART LD+L KHY A+G +VFF+P
Sbjct: 456 WRGVIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLP 515
Query: 567 GSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILR 626
S+ D Y EF+ YL K RA VAK D TT+FLVPPS+F +VLKV G + GV+L+
Sbjct: 516 DSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLK 575
Query: 627 LEYPTLNHGPMPIEGVMKNENLLSYNENAFNPNSSFPSVRIPPPSISEYG 676
P+P M+ + L P + + ++ PPS +EYG
Sbjct: 576 FP-------PVPSSAPMQQPSHLRV------PTTQY--MQQIPPSQTEYG 610
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%)
Query: 176 EPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLTSACRARDNL 235
+PS +LW+G+P ++++E +L A FGEIE+I +F R+Y+ V FRS+ A RA++ L
Sbjct: 239 QPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNYSIVEFRSVDEARRAKEGL 298
Query: 236 RGKLFGNPRVHICFA 250
+G+LF +PR+ I ++
Sbjct: 299 QGRLFNDPRITIMYS 313
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 53/78 (67%)
Query: 46 PPSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQ 105
PPS +LWVGNL+ D+ + +L F ++G LDSV RS+AF+ FKR EDA A +LQ
Sbjct: 16 PPSNNLWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQ 75
Query: 106 GFPLAGNSLRIEYAKADK 123
G L G+SL+IE+A+ K
Sbjct: 76 GTSLRGSSLKIEFARPAK 93
>Glyma12g05490.1
Length = 850
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 107/178 (60%), Gaps = 15/178 (8%)
Query: 507 WEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVP 566
W G IAKGGTPVCRARC P+GK + LP +DC+ART LD+L KHY A+G +VFF+P
Sbjct: 434 WRGVIAKGGTPVCRARCVPIGKGIGTELPGVVDCSARTGLDILTKHYADAIGFDIVFFLP 493
Query: 567 GSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILR 626
S+ D Y EF+ YL K RA VAK D TT+FLVPPS+F +VLKV G + GV+L+
Sbjct: 494 DSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLK 553
Query: 627 LEYPTLNHGPMPIEGVMKNENLLSYNENAFNPNSSFPSVRIPPPSISEYGNSGISNHS 684
P+P M+ + L P + ++ PPS +EY +SG ++S
Sbjct: 554 FP-------PVPSSAPMQQPSHL--------PVPTTQYMQHIPPSQTEYVHSGPPDYS 596
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 15/207 (7%)
Query: 49 RHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGFP 108
+ LWVG +S + +++L F +FG ++ F R+ A + F EDA AM+ + G
Sbjct: 96 KQLWVGGISQAVTKEDLEAEFQKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKR 155
Query: 109 LAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRG-----SSPVSNREHRGRHDSPEPH 163
+ G +R+++ ++ T A+ P++ H P
Sbjct: 156 IGGEHIRVDFLRSQS---TKRVSLYFYMLFLFAVLPFPFIIQLPITTLRCLMIHSQPP-- 210
Query: 164 YXXXXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFR 223
+PS +LW+G+P ++++E +L A FGEIE+I +F R+Y+ V FR
Sbjct: 211 -----MGGKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFR 265
Query: 224 SLTSACRARDNLRGKLFGNPRVHICFA 250
S+ A RA++ L+G+LF +PR+ I ++
Sbjct: 266 SVDEARRAKEGLQGRLFNDPRITIMYS 292
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 47 PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
PS +LWVGNL+ D+ + +L F ++G LDSV RS+AF+ FKR EDA A +LQG
Sbjct: 17 PSNNLWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQG 76
Query: 107 FPLAGNSLRIEYAKADK 123
L G+SL+IE+A+ K
Sbjct: 77 TSLRGSSLKIEFARPAK 93
>Glyma13g42060.1
Length = 829
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 83/121 (68%)
Query: 507 WEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVP 566
W G IAKGGTPVC ARC P+GK + +P +DC ART LDML KHY A+G +VFF+P
Sbjct: 430 WRGIIAKGGTPVCCARCVPIGKGIGTEIPGVVDCAARTGLDMLKKHYADAIGFDIVFFLP 489
Query: 567 GSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILR 626
S+ D Y EF+HYL+ K RA +AKL D TT+FLVPPS+ KV KV G + GV+L+
Sbjct: 490 DSEEDFASYTEFLHYLKAKHRAGIAKLVDNTTLFLVPPSDLLTKVFKVTGPERLYGVVLK 549
Query: 627 L 627
Sbjct: 550 F 550
Score = 106 bits (265), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 39/204 (19%)
Query: 47 PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
P + LWVG S + ++L F +FG ++ F R A + F +DA+ AM+ + G
Sbjct: 93 PCKQLWVGGFSPAVAREDLEAEFWKFGKIEDFKFFVDRGTACVEFLNLDDAVRAMKVMNG 152
Query: 107 FPLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXX 166
L G + +++ + P S R RH P
Sbjct: 153 KRLGGGQICVDFLR--------------------------PQSTR----RHLQPS----- 177
Query: 167 XXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLT 226
+PS++LW+GFP +++E +L A FGEI+KI F R Y+FV FRS
Sbjct: 178 ----IGRNSQPSKILWIGFPPSFQIDEQMLHNAMILFGEIDKIKIFPSRHYSFVEFRSTD 233
Query: 227 SACRARDNLRGKLFGNPRVHICFA 250
A RA++ L+G+LF +PR+ I ++
Sbjct: 234 EAQRAKEGLQGRLFNDPRITIMYS 257
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 81/205 (39%), Gaps = 54/205 (26%)
Query: 47 PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
P+ +LWVGNL ++++ L F +G LDS+ R+FAF+ F+R EDA A +LQG
Sbjct: 16 PTNNLWVGNLPPEVIDSNLMELFAPYGSLDSLISYSSRTFAFVLFRRVEDAKAAKSNLQG 75
Query: 107 FPLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXX 166
L G +RIE+A+ KP + G SP RE
Sbjct: 76 AWLRGFQIRIEFARPAKP------------CKQLWVGGFSPAVARED------------- 110
Query: 167 XXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLT 226
L F FG+IE F R A V F +L
Sbjct: 111 -----------------------------LEAEFWKFGKIEDFKFFVDRGTACVEFLNLD 141
Query: 227 SACRARDNLRGKLFGNPRVHICFAK 251
A RA + GK G ++ + F +
Sbjct: 142 DAVRAMKVMNGKRLGGGQICVDFLR 166
>Glyma20g10350.1
Length = 207
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 68/72 (94%)
Query: 50 HLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGFPL 109
HLWVGNLSH+IVE+ELA FLR+GPL++VAFQPGRS+AFINF+ DEDAIDA+R+LQGFPL
Sbjct: 84 HLWVGNLSHNIVEEELAHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDALRALQGFPL 143
Query: 110 AGNSLRIEYAKA 121
AGN LRIE+AKA
Sbjct: 144 AGNPLRIEFAKA 155
>Glyma15g03330.1
Length = 508
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 64/95 (67%)
Query: 533 LLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAK 592
PD +DC ART LDML KHY A+G +VFF+P S+ D Y EF+ YL+ K RA VAK
Sbjct: 62 FCPDIVDCAARTGLDMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLCYLKAKNRAGVAK 121
Query: 593 LDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILRL 627
D TT+FLVPPS+F KVLKV G + GV+L+
Sbjct: 122 FVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKF 156