Miyakogusa Predicted Gene

Lj0g3v0131979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131979.1 tr|G7J2Y0|G7J2Y0_MEDTR TMV resistance protein N
OS=Medicago truncatula GN=MTR_3g072140 PE=4
SV=1,51.55,5e-17,seg,NULL,CUFF.8028.1
         (97 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36790.1                                                        55   2e-08
Glyma16g10020.1                                                        51   3e-07

>Glyma12g36790.1 
          Length = 734

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%)

Query: 1   MAPTMNPLPRIPLLGSMSLSLVSIDIQXXXXXXXXXXXXXXXXXXXVMIQCHSEIQLTQE 60
           M+PTMNPL RIP    +S S+V +D+Q                   V++QC +E QL+++
Sbjct: 622 MSPTMNPLSRIPPFLGISSSIVRMDMQNSNLGDLAPMFSSLSNLRSVLVQCDTESQLSKQ 681

Query: 61  SRRILDDQYDVN 72
            R ILDD + VN
Sbjct: 682 LRTILDDLHCVN 693


>Glyma16g10020.1 
          Length = 1014

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 37/72 (51%)

Query: 1   MAPTMNPLPRIPLLGSMSLSLVSIDIQXXXXXXXXXXXXXXXXXXXVMIQCHSEIQLTQE 60
           M+PTMNPL  I      S SLVSID+Q                   V++QC +E +L+++
Sbjct: 740 MSPTMNPLSCIHSFSGTSSSLVSIDMQNNDLGDLVPVLTNLSNLRSVLVQCDTEAELSKQ 799

Query: 61  SRRILDDQYDVN 72
              ILDD Y VN
Sbjct: 800 LGTILDDAYGVN 811