Miyakogusa Predicted Gene
- Lj0g3v0130859.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0130859.1 tr|Q1XBQ8|Q1XBQ8_SOYBN DNA mismatch repair
protein OS=Glycine max GN=MSH1 PE=2 SV=1,85.91,0,seg,NULL; PREDICTED
PROTEIN,NULL; DNA MISMATCH REPAIR MUTS RELATED PROTEINS,NULL;
MutS_I,DNA mismatc,CUFF.7940.1
(731 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma10g26450.1 1183 0.0
Glyma20g17660.1 641 0.0
Glyma20g17690.1 450 e-126
Glyma10g23920.1 216 6e-56
Glyma10g23900.1 213 4e-55
Glyma10g23930.1 213 6e-55
Glyma10g23950.1 183 6e-46
Glyma10g23960.1 153 7e-37
Glyma10g23890.1 78 3e-14
Glyma09g32150.1 55 4e-07
Glyma19g40350.1 54 4e-07
Glyma07g09660.1 54 7e-07
>Glyma10g26450.1
Length = 975
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/676 (84%), Positives = 605/676 (89%), Gaps = 8/676 (1%)
Query: 56 VGEFYEAIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCIVE 115
VG+FYEA GIDACVLVEYAGLNPFGGLRSDS PRAGCPVVNLRQTLDDLT NG+SVCIVE
Sbjct: 1 VGDFYEAWGIDACVLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTQNGFSVCIVE 60
Query: 116 EVQGPAQARSRKRRFISGHAHPGNPYVYGLVGVDHDLDFPEPMPVVGISHSARGYCINMI 175
EVQGP Q RSRKRRFISGHAHPGNPYVYGL VDHDL+FPEPMPVVGISHSARGYCINM+
Sbjct: 61 EVQGPTQVRSRKRRFISGHAHPGNPYVYGLAAVDHDLNFPEPMPVVGISHSARGYCINMV 120
Query: 176 LETMKTYSLEDCLTEEAVVAKLRTCQYHHLFLHTSLRRNSCGTCNXXXXXXXXXXXXXCN 235
LETMKTYS EDCLTEEAVV KLRTCQYH+LFLHTSLRRNSCGTCN C+
Sbjct: 121 LETMKTYSSEDCLTEEAVVTKLRTCQYHYLFLHTSLRRNSCGTCNWGEFGEGGLLWGECS 180
Query: 236 SRHFEWFDGNPVSDLLVKVKELYGLDYEVTFRNTTVSSGNRARPLSLGTSTQIGVIPTDG 295
SRHF+WFDGNPVSDLL KVKELY +D EVTFRNTTVSSG+RARPL+LGTSTQIG IPT+G
Sbjct: 181 SRHFDWFDGNPVSDLLAKVKELYSIDDEVTFRNTTVSSGHRARPLTLGTSTQIGAIPTEG 240
Query: 296 IPSLLKVLLPSNCNGLPVLYVRDLLLNPPSYEIASNIQATCKLMSSVTCSIPEFTCVSSA 355
IPSLLKVLLPSNCNGLPVLY+R+LLLNPPSYEIAS IQATCKLMSSVTCSIPEFTCVSSA
Sbjct: 241 IPSLLKVLLPSNCNGLPVLYIRELLLNPPSYEIASKIQATCKLMSSVTCSIPEFTCVSSA 300
Query: 356 KIVKLLEWREANHIELCRLKNVLDEVLQMHRTSELNEILKHLIDPTWVATGLEIDFKTLV 415
K+VKLLEWRE NH+E CR+KNVLDE+LQM+ TSELNEILKHLI+PTWVATGLEIDF+TLV
Sbjct: 301 KLVKLLEWREVNHMEFCRIKNVLDEILQMYSTSELNEILKHLIEPTWVATGLEIDFETLV 360
Query: 416 GGCESASGKIGEVISLDGEKDQRVSSCSIIPNEFFEDMESAWKGRIKTIHMDDVLTEVEK 475
GCE AS KIGE++SLD E DQ+++S S IP+EFFEDMES WKGRIK IH+DDV T VEK
Sbjct: 361 AGCEIASSKIGEIVSLDDENDQKINSFSFIPHEFFEDMESKWKGRIKRIHIDDVFTAVEK 420
Query: 476 AAEALHLAVSEDFTPIVSRIKATVAPLGGPKGEISYFREHETVWFKGKRFTPNLWAGSPG 535
AAEALH+AV+EDF P+VSRIKA VAPLGGPKGEISY RE E VWFKGKRFTPNLWAGSPG
Sbjct: 421 AAEALHIAVTEDFVPVVSRIKAIVAPLGGPKGEISYAREQEAVWFKGKRFTPNLWAGSPG 480
Query: 536 EEQIKQLRHALDSKGRKVGEEWFTTPKVDSALARYHEANAKAKARVLELLRGLATELQSS 595
EEQIKQLRHALDSKGRKVGEEWFTTPKV++AL RYHEANAKAK RVLE+LRGLA ELQ S
Sbjct: 481 EEQIKQLRHALDSKGRKVGEEWFTTPKVEAALTRYHEANAKAKERVLEILRGLAAELQYS 540
Query: 596 INILVFSSTLLVIAKALFAHVSEGRRRKWVFPTLVESKGSEDVKLLYKNHGLNIVGLLPY 655
INILVFSS LLVIAKALFAH SEGRRR+WVFPTL DVK L K HG+ I GLLPY
Sbjct: 541 INILVFSSMLLVIAKALFAHASEGRRRRWVFPTL-------DVKSLDKTHGMKISGLLPY 593
Query: 656 WFNIAEGGAVRNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYF 715
WF+IAE G VRN VDMQSLFLLTGPNGGGKSS LRSICAAALLGI GLMVPAESA IPYF
Sbjct: 594 WFHIAE-GVVRNDVDMQSLFLLTGPNGGGKSSFLRSICAAALLGICGLMVPAESALIPYF 652
Query: 716 DSIMLHMKSYDSPADK 731
DSI LHMKSYDSPADK
Sbjct: 653 DSITLHMKSYDSPADK 668
>Glyma20g17660.1
Length = 665
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/376 (81%), Positives = 338/376 (89%), Gaps = 1/376 (0%)
Query: 356 KIVKLLEWREANHIELCRLKNVLDEVLQMHRTSELNEILKHLIDPTWVATGLEIDFKTLV 415
++VKLLEWRE NH+E CR+KNVLDE+L M++TSELN+ILKHLIDPTWVATGLEIDF+TLV
Sbjct: 1 QLVKLLEWREVNHMEFCRIKNVLDEILLMNKTSELNDILKHLIDPTWVATGLEIDFETLV 60
Query: 416 GGCESASGKIGEVISLDGEKDQRVSSCSIIPNEFFEDMESAWKGRIKTIHMDDVLTEVEK 475
GCE AS KIG++ISLDG DQ+++S S+IP+EFFED+ES WKGRIK IH+DDV T VEK
Sbjct: 61 AGCEVASTKIGDIISLDGGNDQKINSFSLIPHEFFEDIESKWKGRIKRIHIDDVFTAVEK 120
Query: 476 AAEALHLAVSEDFTPIVSRIKATVAPLGGPKGEISYFREHETVWFKGKRFTPNLWAGSPG 535
AAEALH+AV+EDF PI+SRIKATV+PLGGPKGEISY REHE VWFKGKRFTPNLWAGSPG
Sbjct: 121 AAEALHIAVTEDFVPILSRIKATVSPLGGPKGEISYAREHEAVWFKGKRFTPNLWAGSPG 180
Query: 536 EEQIKQLRHALDSKGRKVGEEWFTTPKVDSALARYHEANAKAKARVLELLRGLATELQSS 595
EEQIKQL HALDSKG+K GEEWFTT KV++AL RYHEAN KAK RVLE+LRGLA ELQ +
Sbjct: 181 EEQIKQLSHALDSKGKKAGEEWFTTLKVEAALTRYHEANGKAKERVLEILRGLAAELQYN 240
Query: 596 INILVFSSTLLVIAKALFAHVSEGRRRKWVFPTLVESKGSEDVKLLYKNHGLNIVGLLPY 655
INILVFSSTLLVIAKALFAH SEGRRR+WVFPTLVES G EDVK L K HG+ IVGLLPY
Sbjct: 241 INILVFSSTLLVIAKALFAHASEGRRRRWVFPTLVESHGFEDVKSLNKIHGMKIVGLLPY 300
Query: 656 WFNIAEGGAVRNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYF 715
W ++AE G VRN VDMQSLFLLTGPNGGGKSSLLRSICAAALLGI GLMVPAESA IPYF
Sbjct: 301 WLHVAE-GVVRNDVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGLMVPAESAHIPYF 359
Query: 716 DSIMLHMKSYDSPADK 731
DSIMLHM SYDSPADK
Sbjct: 360 DSIMLHMNSYDSPADK 375
>Glyma20g17690.1
Length = 260
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/259 (82%), Positives = 226/259 (87%)
Query: 55 RVGEFYEAIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCIV 114
+VGEFYEA GIDAC+LVEY GLNP GGLRSDS PRAGCPVVNLRQTLDDLT NGYSVCIV
Sbjct: 1 QVGEFYEAWGIDACILVEYVGLNPIGGLRSDSIPRAGCPVVNLRQTLDDLTTNGYSVCIV 60
Query: 115 EEVQGPAQARSRKRRFISGHAHPGNPYVYGLVGVDHDLDFPEPMPVVGISHSARGYCINM 174
EE QGP+QARSRKRRFISGHAHPGNPYVYGL VDHDL+FPEPMPVVGISHSARGYCINM
Sbjct: 61 EEAQGPSQARSRKRRFISGHAHPGNPYVYGLATVDHDLNFPEPMPVVGISHSARGYCINM 120
Query: 175 ILETMKTYSLEDCLTEEAVVAKLRTCQYHHLFLHTSLRRNSCGTCNXXXXXXXXXXXXXC 234
+LETMKTYS EDCLTEEAVV KLRTCQYHHLFLHTS+R+NS GTC+ C
Sbjct: 121 VLETMKTYSSEDCLTEEAVVTKLRTCQYHHLFLHTSIRQNSSGTCDWGEFGEGGLLWGEC 180
Query: 235 NSRHFEWFDGNPVSDLLVKVKELYGLDYEVTFRNTTVSSGNRARPLSLGTSTQIGVIPTD 294
+SRHFEWFDGNP+SDLL KVKELY LD EVTFRN TV SGNRA+PL+LGTSTQIG IPT+
Sbjct: 181 SSRHFEWFDGNPISDLLAKVKELYSLDEEVTFRNATVYSGNRAQPLTLGTSTQIGAIPTE 240
Query: 295 GIPSLLKVLLPSNCNGLPV 313
GIPSLLKVLL NCNGLP
Sbjct: 241 GIPSLLKVLLSRNCNGLPA 259
>Glyma10g23920.1
Length = 233
Score = 216 bits (551), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 125/156 (80%), Gaps = 5/156 (3%)
Query: 1 MCKKPSTVQLIQRLEYSNLLGLDSNLKNGSLKEGSLNWEMLQFKSKFPRQVLLCRVGEFY 60
MC+K STVQL +RL+YSNL GL+ N+KNGSLKEG+LNWEMLQFK KFPRQVLLCRVGEFY
Sbjct: 4 MCRKLSTVQLTERLDYSNLPGLNPNMKNGSLKEGTLNWEMLQFKPKFPRQVLLCRVGEFY 63
Query: 61 EAIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCI---VEEV 117
EA GI+ C+LV Y GLNPFGGL+SDS PRAGCPVVNL+QTLDD T GYSVC+ +
Sbjct: 64 EAWGINVCILVAYEGLNPFGGLQSDSIPRAGCPVVNLQQTLDDRTQGGYSVCLPSYQRQA 123
Query: 118 QGPAQARSRKRRFISGHAHPGNPYVYGL-VGVDHDL 152
QG +QARSRKR FISG+ YV GL +GV H L
Sbjct: 124 QGRSQARSRKRLFISGYVQHF-LYVNGLCLGVCHQL 158
>Glyma10g23900.1
Length = 190
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/152 (72%), Positives = 123/152 (80%), Gaps = 7/152 (4%)
Query: 2 CKKPSTVQLIQRLEYSNLLGLDSNLKNGSLKEGSLNWEMLQFKSKFPRQVLLCRVGEFYE 61
C+K STVQL +RL+YSNL GL+ N+KNGSLKEG+LNWEMLQFK KFPRQVLLCRVGEFYE
Sbjct: 1 CRKLSTVQLTERLDYSNLPGLNPNMKNGSLKEGTLNWEMLQFKPKFPRQVLLCRVGEFYE 60
Query: 62 AIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCIVEEVQGPA 121
A GI+ C+LVEY GLNPFGGL+SDS RAGCPVVNL+QTLDDLT +GYSV QGP
Sbjct: 61 AWGINVCILVEYEGLNPFGGLQSDSILRAGCPVVNLQQTLDDLTQSGYSV-----AQGPT 115
Query: 122 QARSRKRRFISGHAHPGNPYVYGL-VGVDHDL 152
QARSRKR FISG+ YV GL +GV H L
Sbjct: 116 QARSRKRLFISGYVQHF-LYVNGLCLGVCHQL 146
>Glyma10g23930.1
Length = 224
Score = 213 bits (542), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/169 (66%), Positives = 125/169 (73%), Gaps = 18/169 (10%)
Query: 1 MCKKPSTVQLIQRLEYSNLLGLDSNLKNGSLKEGSLNWEMLQFKSKFPRQVLLCRVGEFY 60
MC+K STVQL +RL+YSNL GL+ N+KNGSLK G+LNWEMLQFK KFPRQVLLCRVGEFY
Sbjct: 4 MCRKLSTVQLTERLDYSNLPGLNPNMKNGSLKVGTLNWEMLQFKPKFPRQVLLCRVGEFY 63
Query: 61 EAIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCIVE----- 115
EA GI+ C+LVEY LNPFGGL+SDS PRAGCPVVNLRQTLDD T +GYSV I E
Sbjct: 64 EAWGINVCILVEYEVLNPFGGLQSDSIPRAGCPVVNLRQTLDDRTQSGYSVVIYEYMLLI 123
Query: 116 -----------EVQGPAQARSRKRRFISGHAHPGNPYVYGL-VGVDHDL 152
+ QGP QARSRKR FISG+ YV GL +GV H L
Sbjct: 124 NFGLNTALWRRQAQGPTQARSRKRLFISGYVQ-HFLYVNGLCLGVCHQL 171
>Glyma10g23950.1
Length = 190
Score = 183 bits (465), Expect = 6e-46, Method: Composition-based stats.
Identities = 82/98 (83%), Positives = 90/98 (91%)
Query: 16 YSNLLGLDSNLKNGSLKEGSLNWEMLQFKSKFPRQVLLCRVGEFYEAIGIDACVLVEYAG 75
YSNL GL+SN+KNGSLKEG+LNWEMLQFK KFPRQVLLCRVGEFYEA GI+ C+LVEY G
Sbjct: 4 YSNLPGLNSNMKNGSLKEGTLNWEMLQFKPKFPRQVLLCRVGEFYEAWGINVCILVEYEG 63
Query: 76 LNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCI 113
LNPFGGL+SDS PRAGCPVVNLRQTLDDLT +GYSV +
Sbjct: 64 LNPFGGLQSDSIPRAGCPVVNLRQTLDDLTQSGYSVVM 101
>Glyma10g23960.1
Length = 285
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 85/110 (77%), Gaps = 10/110 (9%)
Query: 1 MCKKPSTVQLIQRLEYSNLLGLDSNLKNGSLKEGSLNWEMLQFKSKFPRQVLLCRVGEFY 60
MC K STVQL +RL+YS L GL+ N+KNGSLKEG+LNWEMLQF KFPRQVLLCRVGEFY
Sbjct: 4 MCIKLSTVQLTERLDYSTLPGLNPNMKNGSLKEGTLNWEMLQFTPKFPRQVLLCRVGEFY 63
Query: 61 EAIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYS 110
EA GI+ C+LVEY GLNPFGGL+SDS RAG DLT +GYS
Sbjct: 64 EAWGINVCILVEYEGLNPFGGLQSDSIMRAG----------YDLTQSGYS 103
>Glyma10g23890.1
Length = 43
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 52 LLCRVGEFYEAIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPV 94
+ +VGEFYEA GI+ C+LVEY GLNPFGGL+SDS PRAGCPV
Sbjct: 1 IFAQVGEFYEAWGINVCILVEYEGLNPFGGLQSDSIPRAGCPV 43
>Glyma09g32150.1
Length = 1093
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 563 VDSALARYHEAN-AKAKARVLELLRGLATELQSSINILVFSSTLLVIAKALFAHVSEGRR 621
VDS Y N + A L +L L E + +V + + + ++ FA S R
Sbjct: 680 VDSDFPNYQNHNVTDSDAETLTILAELFLEKAAQWFEVVHAINCIDVLRS-FAVTSTFSR 738
Query: 622 RKWVFPTLVESKGSEDVKLLYKNHGLNIVGLLPYWFNIAEGGA----VRNTVDMQS---- 673
P +V SKG+ K++G ++ + W A G + V N V +
Sbjct: 739 GTMSRPVIVASKGTS------KDNGGTVLKMKGLWHPFALGDSGCLPVPNDVILGENEDG 792
Query: 674 ----LFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDSIMLHMKSYD 726
LLTGPN GGKS+LLRS C A ++ G VP ES + D I + + D
Sbjct: 793 SHPRTLLLTGPNMGGKSTLLRSTCLAVIMAQLGCYVPCESCVLSAVDIIFTRLGAKD 849
>Glyma19g40350.1
Length = 1273
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 670 DMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDSIMLHMKSYDS 727
D S LLTGPN GGKS+LLR +C +L G VPAES + D I + M + D+
Sbjct: 1017 DHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDN 1074
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 30 SLKEGSLNWEMLQFKSKFPRQVLLCRVGEFYEAIGIDACVLVEYAGLNPFGGLRSDSTPR 89
SL +G W +FKSK +VL ++G+FYE +DA V + L G P
Sbjct: 329 SLSDGQKQW--WEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKG----DQPH 382
Query: 90 AGCPVVNLRQTLDDLTNNGYSVCIVEEVQGPAQARSRKR 128
G P N ++ L GY V +VE+ P Q R++
Sbjct: 383 CGFPEKNFSMNVEKLARKGYRVLVVEQTDTPEQLELRRK 421
>Glyma07g09660.1
Length = 1053
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 563 VDSALARYHEAN-AKAKARVLELLRGLATELQSSINILVFSSTLLVIAKALFAHVSEGRR 621
VDS Y N A + A L++L L E + +V + + + ++ FA S
Sbjct: 677 VDSDFPNYQNHNVADSDAETLKILAELFLEKAAQWFEVVHAINCIDVLRS-FAVTSTFSC 735
Query: 622 RKWVFPTLVESKGSEDVKLLYKNHGLNIVGLLPYWFNIAEGGA----VRNTVDMQS---- 673
P +V SKG+ K++G ++ + W A G + V N V +
Sbjct: 736 GTMSRPVIVASKGTS------KDNGRTVLKMKGLWHPFALGDSGCLPVPNDVILGENEDG 789
Query: 674 ----LFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDSIMLHMKSYD 726
LLTGPN GGKS+LLRS C A ++ G VP ES + D I + + D
Sbjct: 790 LYPRTLLLTGPNMGGKSTLLRSTCLAVIMAQLGCYVPCESCVLSAVDIIFTRLGAKD 846