Miyakogusa Predicted Gene

Lj0g3v0129619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129619.1 Non Chatacterized Hit- tr|I1MQB5|I1MQB5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54732
PE,96.33,0,Ribosomal_S3_C,Ribosomal protein S3, C-terminal; no
description,Ribosomal protein S3, C-terminal; RI,CUFF.7852.1
         (108 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g33240.1                                                       215   7e-57
Glyma16g33230.1                                                       214   2e-56
Glyma09g28440.1                                                       211   1e-55
Glyma20g21190.1                                                       207   3e-54
Glyma10g26790.1                                                       207   3e-54
Glyma10g26890.1                                                       206   4e-54
Glyma14g15230.1                                                       156   6e-39
Glyma13g33630.1                                                        51   3e-07

>Glyma16g33240.1 
          Length = 235

 Score =  215 bits (548), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 105/109 (96%), Positives = 106/109 (97%), Gaps = 1/109 (0%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPVA 108
           KIMLDWDPKGKQGPKTPLPD+VTIHTPKEEEEY RP AVLA DIEVPVA
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATDIEVPVA 235


>Glyma16g33230.1 
          Length = 236

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 106/109 (97%), Gaps = 1/109 (0%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPVA 108
           KIMLDWDPKGKQGPKTPLPD+VTIHTPKEEEEY RP AVLA +IEVPVA
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATNIEVPVA 235


>Glyma09g28440.1 
          Length = 236

 Score =  211 bits (537), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/110 (96%), Positives = 107/110 (97%), Gaps = 2/110 (1%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIE-VPVA 108
           KIMLDWDPKGKQGPKTPLPD+VTIHTPKEEEEY RP AVLANDIE VPVA
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYNRPPAVLANDIEVVPVA 236


>Glyma20g21190.1 
          Length = 236

 Score =  207 bits (526), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/110 (93%), Positives = 106/110 (96%), Gaps = 2/110 (1%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVL-ANDIEVPVA 108
           KIMLDWDPKGKQGPKTPLPD+VTIH+PKEEEEY +P  VL ANDIEVPVA
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIQPAPVLAANDIEVPVA 236


>Glyma10g26790.1 
          Length = 236

 Score =  207 bits (526), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/110 (93%), Positives = 106/110 (96%), Gaps = 2/110 (1%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVL-ANDIEVPVA 108
           KIMLDWDPKGKQGPKTPLPD+VTIH+PKEEEEY +P  VL ANDIEVPVA
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIQPAPVLAANDIEVPVA 236


>Glyma10g26890.1 
          Length = 239

 Score =  206 bits (525), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/110 (93%), Positives = 105/110 (95%), Gaps = 3/110 (2%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLA--NDIEVPV 107
           KIMLDWDPKGKQGPKTPLPD+VTIH+PKEEEEY RP  VLA  NDIEVPV
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIRPAPVLAANNDIEVPV 236


>Glyma14g15230.1 
          Length = 98

 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 78/91 (85%), Gaps = 5/91 (5%)

Query: 1  MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
          MESGAKGCEVI SGKLRA RAKSMKFKDGYMIS GQPVKDYIDS VRH     G LGIKV
Sbjct: 11 MESGAKGCEVITSGKLRALRAKSMKFKDGYMISFGQPVKDYIDSVVRH-----GALGIKV 65

Query: 61 KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEE 91
          KIMLDWDPKG Q PKTP PD+VTIHTPKEEE
Sbjct: 66 KIMLDWDPKGNQSPKTPFPDLVTIHTPKEEE 96


>Glyma13g33630.1 
          Length = 24

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 58 IKVKIMLDWDPKGKQGPKTPLPDI 81
          IKVKIMLDWDPKGKQGPKTPLPD+
Sbjct: 1  IKVKIMLDWDPKGKQGPKTPLPDL 24