Miyakogusa Predicted Gene
- Lj0g3v0128759.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0128759.1 tr|A9S5H1|A9S5H1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162953,27.75,2e-16, ,CUFF.7784.1
(305 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma16g15580.1 453 e-128
Glyma08g46560.1 395 e-110
Glyma18g35400.1 388 e-108
Glyma08g46560.2 385 e-107
Glyma03g09410.1 325 4e-89
Glyma16g15580.2 288 4e-78
Glyma16g15580.3 168 6e-42
Glyma08g09710.1 81 2e-15
Glyma05g26710.1 74 3e-13
Glyma11g33300.2 60 2e-09
Glyma11g33300.1 60 2e-09
Glyma14g39200.1 57 2e-08
>Glyma16g15580.1
Length = 309
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/311 (73%), Positives = 263/311 (84%), Gaps = 8/311 (2%)
Query: 1 MDFNNND---KEPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAV 57
MD+NNND +EPW+W G+ Y+L+ T +FEISEELWNDVPQNEEDLSYM DDETTPVKA
Sbjct: 1 MDYNNNDHGAREPWDWQGKKYSLRRTFDFEISEELWNDVPQNEEDLSYMLDDETTPVKAC 60
Query: 58 GDLAYN-GDSNNVPKELEECRET-SQVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKED 115
GDLAYN +++N+ KELEECRET SQ KRRRMLQFNSQ+ D SLS E M+ +YLKNGKED
Sbjct: 61 GDLAYNVNNADNMQKELEECRETYSQAKRRRMLQFNSQESDQSLSNEGMSLSYLKNGKED 120
Query: 116 AMKDIFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQLSPDDLNFTG 175
+K+IFPEVS WVSGAS + LGNASAS Y DLESTE WLA+YFND +M +SP++L F+
Sbjct: 121 PVKEIFPEVSQWVSGAS-DFTLGNASASDYVDLESTETWLADYFNDAEMDISPEELKFSV 179
Query: 176 ADDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFA 235
ADDV ID E+S I PS+EQ++VQ+ + RT +NIIFKGRKSFI PTKLAS+VAYPFA
Sbjct: 180 ADDVQIDGTEVSAIKPSREQNVVQQ-THIPRTTRNIIFKGRKSFIHMPTKLASSVAYPFA 238
Query: 236 FIKPSGAHGDVTLKEINQRIRTPPPSKSKQ-NSEDPSAYPKSAFSGKPVVGKTKIRTEGG 294
FIKPSGAHGDVTLKEINQ I+TPPP KSKQ N +DPSAYPKSAFSGKPVVGKTKIRTEGG
Sbjct: 239 FIKPSGAHGDVTLKEINQHIQTPPPLKSKQSNDDDPSAYPKSAFSGKPVVGKTKIRTEGG 298
Query: 295 KGSITIMRTKG 305
KGSITI RTKG
Sbjct: 299 KGSITITRTKG 309
>Glyma08g46560.1
Length = 302
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/311 (65%), Positives = 248/311 (79%), Gaps = 15/311 (4%)
Query: 1 MDFNNNDKEPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAVGDL 60
MD++N++KEPW+WH E Y LQ + N+EIS +WN V QNE DLS++F+DETTPVKA GD
Sbjct: 1 MDYSNDNKEPWDWHREDYCLQRSFNYEISPGIWNGVSQNE-DLSFVFNDETTPVKACGDF 59
Query: 61 AYNGDSNNVP---KELEECRETS-QVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKEDA 116
AYN +++ KE ++C ++S Q+KRRRMLQFNSQD H LS E+M++AYLK GKE+
Sbjct: 60 AYNVNNSESNNVQKESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLK-GKEEP 118
Query: 117 MKDIFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQLSPDDLNFTGA 176
+D+FPE S WVSG G+ASAS Y+DLES EGWLA+ F D +MQL PDDLNF+GA
Sbjct: 119 KEDVFPEFSQWVSGTP-----GSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGA 173
Query: 177 DDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFAF 236
D+V +D+A+L + PP+ EQ++VQ T+TPKNIIFKG KSFI TPTKLA++VAYPFAF
Sbjct: 174 DEVQVDVADLGNFPPACEQNVVQH--GFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAF 231
Query: 237 IKPSGAHGDVTLKEINQRIRTPPPS-KSKQNS-EDPSAYPKSAFSGKPVVGKTKIRTEGG 294
IKP GAHGDVTLKEINQRI +PPP KS+Q S EDPSAYPKSAFSGKPVVGKT+I EGG
Sbjct: 232 IKPCGAHGDVTLKEINQRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGG 291
Query: 295 KGSITIMRTKG 305
KGSITIMRTKG
Sbjct: 292 KGSITIMRTKG 302
>Glyma18g35400.1
Length = 298
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 246/307 (80%), Gaps = 11/307 (3%)
Query: 1 MDFNNNDKEPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAVGDL 60
MD++N+++EPW+WH E Y LQ + ++E S+ LWN VPQNE DLS +F+DETTPVKA GD
Sbjct: 1 MDYSNDNREPWDWHREDYCLQRSFDYENSQGLWNGVPQNE-DLSNVFNDETTPVKACGDF 59
Query: 61 AYNGDSNNVPKELEECRETS-QVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKEDAMKD 119
AYN +++ + KE ++C ++S Q+KRRRMLQFN+QD H LS E M++AYLK GKE++ +D
Sbjct: 60 AYNVNNSELQKESDKCLKSSDQIKRRRMLQFNTQDGGHFLSNEHMSSAYLK-GKEESNED 118
Query: 120 IFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQLSPDDLNFTGADDV 179
+FPE+S WVSGAS + N Y+DLES EGWLA+ F D +MQL PDD NF+GAD V
Sbjct: 119 VFPELSHWVSGASGSASASN-----YEDLESAEGWLADCFKDAEMQLCPDDWNFSGADAV 173
Query: 180 HIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFAFIKP 239
ID+A+L + PP+ EQ+++Q VT +TPKNI+FKG KSFI TPTKLA++VAYPF FIKP
Sbjct: 174 QIDVADLCNFPPACEQNVLQHHVT--QTPKNIVFKGGKSFIETPTKLAASVAYPFTFIKP 231
Query: 240 SGAHGDVTLKEINQRIRTPPPS-KSKQNSEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSI 298
GAHGDVTLKEINQRI +PPP KS+Q+ EDPSAYPKSAFSGKPVVGKTKI EGGKGSI
Sbjct: 232 CGAHGDVTLKEINQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIEGGKGSI 291
Query: 299 TIMRTKG 305
TIMRTKG
Sbjct: 292 TIMRTKG 298
>Glyma08g46560.2
Length = 299
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/303 (66%), Positives = 240/303 (79%), Gaps = 15/303 (4%)
Query: 9 EPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAVGDLAYNGDSNN 68
EPW+WH E Y LQ + N+EIS +WN V QNE DLS++F+DETTPVKA GD AYN +++
Sbjct: 6 EPWDWHREDYCLQRSFNYEISPGIWNGVSQNE-DLSFVFNDETTPVKACGDFAYNVNNSE 64
Query: 69 VP---KELEECRETS-QVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKEDAMKDIFPEV 124
KE ++C ++S Q+KRRRMLQFNSQD H LS E+M++AYLK GKE+ +D+FPE
Sbjct: 65 SNNVQKESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLK-GKEEPKEDVFPEF 123
Query: 125 SPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQLSPDDLNFTGADDVHIDIA 184
S WVSG G+ASAS Y+DLES EGWLA+ F D +MQL PDDLNF+GAD+V +D+A
Sbjct: 124 SQWVSGTP-----GSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGADEVQVDVA 178
Query: 185 ELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFAFIKPSGAHG 244
+L + PP+ EQ++VQ T+TPKNIIFKG KSFI TPTKLA++VAYPFAFIKP GAHG
Sbjct: 179 DLGNFPPACEQNVVQH--GFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHG 236
Query: 245 DVTLKEINQRIRTPPPS-KSKQNS-EDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMR 302
DVTLKEINQRI +PPP KS+Q S EDPSAYPKSAFSGKPVVGKT+I EGGKGSITIMR
Sbjct: 237 DVTLKEINQRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMR 296
Query: 303 TKG 305
TKG
Sbjct: 297 TKG 299
>Glyma03g09410.1
Length = 248
Score = 325 bits (833), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 181/274 (66%), Positives = 197/274 (71%), Gaps = 40/274 (14%)
Query: 46 MFDDETTPVKAVGDLAYNGDSNNVPKELEECRETSQVKRRRMLQFNSQDRDHSLSKEEMT 105
M DDETTPVKA A KRRRMLQFNSQD D SLS EEM+
Sbjct: 1 MLDDETTPVKACDLFA--------------------SKRRRMLQFNSQDSDQSLSNEEMS 40
Query: 106 AAYLKNGKEDAMKDIFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQ 165
+YLKNGKED +K+IFPEVS WVSGAS GNASAS Y DLESTE WLA+YFND M
Sbjct: 41 LSYLKNGKEDPVKEIFPEVSQWVSGAS-----GNASASDYVDLESTETWLADYFNDAVMD 95
Query: 166 LSPDDLNFTGADDVHID-------------IAELSDIPPSQEQHMVQKRVTVTRTPKNII 212
SP++LNF+ AD V ID AE+S I PS EQ++VQ+ V RT NII
Sbjct: 96 FSPEELNFSVADGVQIDDGTGRFYSKYFFPPAEVSAITPSHEQNVVQQ-THVPRTTCNII 154
Query: 213 FKGRKSFIRTPTKLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQN-SEDPS 271
FKGRKSFI PTKLAS+VAYPFAFIKPSGAHGDVTLKEINQRI+TP PSKS Q+ +DPS
Sbjct: 155 FKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGDVTLKEINQRIQTPSPSKSNQSIDDDPS 214
Query: 272 AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 305
AYPKSAFSGKPVVGKTKIRTEGGKGSITI RTKG
Sbjct: 215 AYPKSAFSGKPVVGKTKIRTEGGKGSITITRTKG 248
>Glyma16g15580.2
Length = 220
Score = 288 bits (738), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/220 (67%), Positives = 179/220 (81%), Gaps = 9/220 (4%)
Query: 1 MDFNNND---KEPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAV 57
MD+NNND +EPW+W G+ Y+L+ T +FEISEELWNDVPQNEEDLSYM DDETTPVKA
Sbjct: 1 MDYNNNDHGAREPWDWQGKKYSLRRTFDFEISEELWNDVPQNEEDLSYMLDDETTPVKAC 60
Query: 58 GDLAYN-GDSNNVPKELEECRET-SQVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKED 115
GDLAYN +++N+ KELEECRET SQ KRRRMLQFNSQ+ D SLS E M+ +YLKNGKED
Sbjct: 61 GDLAYNVNNADNMQKELEECRETYSQAKRRRMLQFNSQESDQSLSNEGMSLSYLKNGKED 120
Query: 116 AMKDIFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQLSPDDLNFTG 175
+K+IFPEVS WVSGA S+ LGNASAS Y DLESTE WLA+YFND +M +SP++L F+
Sbjct: 121 PVKEIFPEVSQWVSGA-SDFTLGNASASDYVDLESTETWLADYFNDAEMDISPEELKFSV 179
Query: 176 ADDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKG 215
ADDV ID E+S I PS+EQ++VQ+ + RT +NIIFKG
Sbjct: 180 ADDVQID--EVSAIKPSREQNVVQQ-THIPRTTRNIIFKG 216
>Glyma16g15580.3
Length = 160
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/116 (71%), Positives = 97/116 (83%), Gaps = 5/116 (4%)
Query: 1 MDFNNND---KEPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAV 57
MD+NNND +EPW+W G+ Y+L+ T +FEISEELWNDVPQNEEDLSYM DDETTPVKA
Sbjct: 1 MDYNNNDHGAREPWDWQGKKYSLRRTFDFEISEELWNDVPQNEEDLSYMLDDETTPVKAC 60
Query: 58 GDLAYN-GDSNNVPKELEECRET-SQVKRRRMLQFNSQDRDHSLSKEEMTAAYLKN 111
GDLAYN +++N+ KELEECRET SQ KRRRMLQFNSQ+ D SLS E M+ +YLKN
Sbjct: 61 GDLAYNVNNADNMQKELEECRETYSQAKRRRMLQFNSQESDQSLSNEGMSLSYLKN 116
>Glyma08g09710.1
Length = 283
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 225 KLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSA-----FS 279
K+ + V YPFA +KP G GDVTL +IN+RI PP + D + P + S
Sbjct: 198 KVVTRVVYPFAMVKPGGREGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSAEGPGLS 257
Query: 280 GKPVVGKTKIRTEGGKGSITIMRTKG 305
GK VV T+I T+GG+G+ITI+RTKG
Sbjct: 258 GKAVVALTRIHTQGGRGTITIIRTKG 283
>Glyma05g26710.1
Length = 241
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 225 KLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSA-----FS 279
K+ + V YPFA +KP G GDVTL +IN+RI PP + D + P + S
Sbjct: 157 KVVTRVVYPFAMVKPGGREGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSAEGPGLS 216
Query: 280 GKPVVGKTKIRTEGGKGSITIMRTKG 305
GK VV T+I T+ G+G+ITI+RTKG
Sbjct: 217 GKAVVALTRIHTQ-GRGTITIIRTKG 241
>Glyma11g33300.2
Length = 200
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 230 VAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQ---NSEDPSAYPKSAF--SGKPVV 284
+AYPF +KP G G+ TLK+IN ++ P +S S AF SGK V
Sbjct: 121 IAYPFELVKPGGVEGETTLKDINHQMLMSPSKPIPHPVGDSLTHSCISNRAFGISGKAVA 180
Query: 285 GKTKIRTEGGKGSITIMRTKG 305
T+I T+ G+GSITI+RTKG
Sbjct: 181 ALTRIHTQ-GRGSITIIRTKG 200
>Glyma11g33300.1
Length = 201
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 230 VAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQ---NSEDPSAYPKSAF--SGKPVV 284
+AYPF +KP G G+ TLK+IN ++ P +S S AF SGK V
Sbjct: 122 IAYPFELVKPGGVEGETTLKDINHQMLMSPSKPIPHPVGDSLTHSCISNRAFGISGKAVA 181
Query: 285 GKTKIRTEGGKGSITIMRTKG 305
T+I T+ G+GSITI+RTKG
Sbjct: 182 ALTRIHTQ-GRGSITIIRTKG 201
>Glyma14g39200.1
Length = 223
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 227 ASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPP------PSKSKQNSEDPSAYPKSAF-- 278
A VA+PF +K G G+ TLK+IN +I + P P K + +P + +F
Sbjct: 138 ALKVAFPFKLVKSGGVEGETTLKDINHQILSTPSASKPIPHPVKDSVTNPCKLVRGSFGL 197
Query: 279 SGKPVVGKTKIRTEGGKGSITIMRTK 304
SGK V T+I T G+GSITI+RTK
Sbjct: 198 SGKEVASVTRIHTR-GRGSITIIRTK 222