Miyakogusa Predicted Gene

Lj0g3v0126989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126989.1 Non Chatacterized Hit- tr|B9FBZ9|B9FBZ9_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,62.34,1e-16,seg,NULL; Patched,Patched; NIEMANN-PICK C1,NULL;
PATCHED-RELATED,NULL; SSD,Sterol-sensing domain,CUFF.7670.1
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g48070.1                                                        58   2e-09
Glyma14g00400.1                                                        56   7e-09
Glyma06g02020.1                                                        47   6e-06
Glyma04g01900.1                                                        47   6e-06

>Glyma02g48070.1 
          Length = 1194

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 30/33 (90%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITILVSYIVMFAYISVTLGDTPP  S F+
Sbjct: 540 TADVITILVSYIVMFAYISVTLGDTPPHPSFFF 572


>Glyma14g00400.1 
          Length = 680

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITILVSYIVMFAYISVTLGD PP  SS +
Sbjct: 601 TADVITILVSYIVMFAYISVTLGDRPPHPSSLF 633


>Glyma06g02020.1 
          Length = 1292

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 28/33 (84%), Gaps = 1/33 (3%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD ITILVSY+VMFAYIS+TLGDT    SSFY
Sbjct: 629 TADAITILVSYLVMFAYISLTLGDT-LHPSSFY 660


>Glyma04g01900.1 
          Length = 772

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 28/33 (84%), Gaps = 1/33 (3%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD ITILVSY+VMFAYIS+TLGDT    SSFY
Sbjct: 352 TADAITILVSYLVMFAYISLTLGDT-LHPSSFY 383