Miyakogusa Predicted Gene

Lj0g3v0126969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126969.1 tr|G7KK50|G7KK50_MEDTR Alanyl-tRNA synthetase
(Fragment) OS=Medicago truncatula GN=MTR_6g045600
PE=3,94.85,0,tRNA-synt_2c,Alanyl-tRNA synthetase, class IIc,
N-terminal; SUBFAMILY NOT NAMED,Alanine-tRNA ligase,,CUFF.7668.1
         (97 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g10860.1                                                       195   7e-51
Glyma12g03140.1                                                       192   5e-50
Glyma04g00280.1                                                        52   1e-07
Glyma06g00330.1                                                        52   1e-07

>Glyma11g10860.1 
          Length = 950

 Score =  195 bits (496), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 93/97 (95%), Positives = 95/97 (97%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADH 60
           MGFERLTSILQ+KMSNYDTDVFLPIFD IQ ATGARPYSGKVGPDDADKVDMAYRVVADH
Sbjct: 247 MGFERLTSILQDKMSNYDTDVFLPIFDVIQRATGARPYSGKVGPDDADKVDMAYRVVADH 306

Query: 61  IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           IRTLSFAIADGSRPGN+GREYVLRRILRRAVRYGREV
Sbjct: 307 IRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREV 343


>Glyma12g03140.1 
          Length = 964

 Score =  192 bits (489), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 91/97 (93%), Positives = 93/97 (95%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADH 60
           +GFERLTSILQ+KMSNYDTDVFLPIFD IQ ATGARPYSGKVGPDD D VDMAYRVVADH
Sbjct: 247 LGFERLTSILQDKMSNYDTDVFLPIFDVIQWATGARPYSGKVGPDDVDNVDMAYRVVADH 306

Query: 61  IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV
Sbjct: 307 IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 343


>Glyma04g00280.1 
          Length = 860

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 8/96 (8%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFD-AIQLATGARPYSGKVGPDDADKVDMAYRVVAD 59
           +G ER+  ILQ   +NY+TD+  PI + A +LA  +   +     DD  K ++  +++ D
Sbjct: 181 LGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGIA-----DDQTKRNL--KIIGD 233

Query: 60  HIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGR 95
           H+R + F I+DG  P N GR YV+RR++RR VR GR
Sbjct: 234 HMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGR 269


>Glyma06g00330.1 
          Length = 980

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 8/96 (8%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFD-AIQLATGARPYSGKVGPDDADKVDMAYRVVAD 59
           +G ER+  ILQ   +NY+TD+  PI + A +LA  +   +     DD  K ++  +++ D
Sbjct: 301 LGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGIA-----DDQTKRNL--KIIGD 353

Query: 60  HIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGR 95
           H+R + F I+DG  P N GR YV+RR++RR VR GR
Sbjct: 354 HMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGR 389