Miyakogusa Predicted Gene

Lj0g3v0123959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123959.1 tr|B6UF44|B6UF44_MAIZE DNA binding protein OS=Zea
mays PE=4 SV=1,56.52,2e-18,no description,Helix-loop-helix domain;
coiled-coil,NULL; seg,NULL; HLH,Helix-loop-helix domain;
HLH,CUFF.7444.1
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g34080.1                                                       148   1e-36
Glyma06g20400.1                                                       143   3e-35
Glyma08g41000.1                                                       125   9e-30
Glyma02g02250.1                                                       123   5e-29
Glyma01g05310.1                                                       122   1e-28
Glyma19g02510.1                                                       120   3e-28
Glyma13g05280.1                                                       120   3e-28
Glyma18g15920.1                                                       119   6e-28
Glyma09g37370.1                                                       115   8e-27
Glyma18g49320.1                                                       115   9e-27
Glyma06g20520.1                                                        57   4e-09
Glyma04g33920.1                                                        54   3e-08

>Glyma04g34080.1 
          Length = 92

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 77/77 (100%)

Query: 16 NITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75
          NITDDQI+DLVSKLQQLLPEIR+RRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL
Sbjct: 16 NITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75

Query: 76 ATTDTAQAAIIRNLLMQ 92
          ATTDTAQAAIIRNLLMQ
Sbjct: 76 ATTDTAQAAIIRNLLMQ 92


>Glyma06g20400.1 
          Length = 92

 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 16 NITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75
          NITDDQI+DLVSKLQQLLPEIR+RRSDKVSASKVLQETCNYIRSLHREV DLSERLSELL
Sbjct: 16 NITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVGDLSERLSELL 75

Query: 76 ATTDTAQAAIIRNLLMQ 92
           TTDTAQAAIIRNLLMQ
Sbjct: 76 DTTDTAQAAIIRNLLMQ 92


>Glyma08g41000.1 
          Length = 93

 Score =  125 bits (315), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 72/77 (93%), Gaps = 2/77 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          ITD QI DL+SKLQQL+PE+R RRSDKVSASKVLQETCNYI+SLHREVDDLS+RLS+LLA
Sbjct: 17 ITDAQITDLISKLQQLIPELRARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLA 76

Query: 77 TTD--TAQAAIIRNLLM 91
          TTD  +AQAAIIR+LLM
Sbjct: 77 TTDSNSAQAAIIRSLLM 93


>Glyma02g02250.1 
          Length = 93

 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 71/77 (92%), Gaps = 2/77 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          ITD QI DLVSKLQQL+PE+R RRSDKVSA+KVLQETCNYI++LHREVDDLS+RLSELLA
Sbjct: 17 ITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLA 76

Query: 77 TTD--TAQAAIIRNLLM 91
           TD  +AQAAIIR+LLM
Sbjct: 77 NTDSNSAQAAIIRSLLM 93


>Glyma01g05310.1 
          Length = 93

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 71/77 (92%), Gaps = 2/77 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          ITD QI DLVSKLQQL+PE+R RRSDKVS++KVLQETCNYI++LHREVDDLS+RLSELLA
Sbjct: 17 ITDAQITDLVSKLQQLIPELRARRSDKVSSAKVLQETCNYIKNLHREVDDLSDRLSELLA 76

Query: 77 TTD--TAQAAIIRNLLM 91
           TD  +AQAAIIR+LLM
Sbjct: 77 NTDSNSAQAAIIRSLLM 93


>Glyma19g02510.1 
          Length = 91

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/76 (81%), Positives = 71/76 (93%), Gaps = 2/76 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          I+DDQI DLVSKL+QL+PEIR+RRSDKVSASKVLQETCNYIRSLHREVDDLSERLS+LLA
Sbjct: 15 ISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLA 74

Query: 77 T--TDTAQAAIIRNLL 90
          T   D+ +AAIIR+L+
Sbjct: 75 TIDADSPEAAIIRSLI 90


>Glyma13g05280.1 
          Length = 91

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/76 (81%), Positives = 71/76 (93%), Gaps = 2/76 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          I+DDQI DLVSKL+QL+PEIR+RRSDKVSASKVLQETCNYIRSLHREVDDLSERLS+LLA
Sbjct: 15 ISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLA 74

Query: 77 T--TDTAQAAIIRNLL 90
          T   D+ +AAIIR+L+
Sbjct: 75 TIDADSPEAAIIRSLI 90


>Glyma18g15920.1 
          Length = 93

 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 71/77 (92%), Gaps = 2/77 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          ITD QI D++SKLQQL+PE+  RRSDKVSASKVLQETCNYI+SLHREVDDLS+RLS+LLA
Sbjct: 17 ITDAQITDIISKLQQLIPELDARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLA 76

Query: 77 TTD--TAQAAIIRNLLM 91
          TTD  +AQAAIIR+LL+
Sbjct: 77 TTDSNSAQAAIIRSLLL 93


>Glyma09g37370.1 
          Length = 91

 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/76 (78%), Positives = 68/76 (89%), Gaps = 2/76 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          I+DDQI +LVSKL+QL+PEIR RRSDKVSASKVLQETCNYIRSLHREV DLSERLS+LL 
Sbjct: 15 ISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLT 74

Query: 77 T--TDTAQAAIIRNLL 90
          T   D+A+A IIR+LL
Sbjct: 75 TIDADSAEAGIIRSLL 90


>Glyma18g49320.1 
          Length = 92

 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 68/78 (87%), Gaps = 2/78 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          I+DDQI +LVSKL+QL+PEIR RRSDKVSASKVLQETCNYIR LHREV DLSERLS+LL 
Sbjct: 15 ISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRGLHREVSDLSERLSQLLT 74

Query: 77 T--TDTAQAAIIRNLLMQ 92
          T   D+A+A IIR+LL Q
Sbjct: 75 TIDADSAEAGIIRSLLNQ 92


>Glyma06g20520.1 
          Length = 91

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSAS--KVLQETCNYIRSLHREVDDLSERLSEL 74
           T+ +I+DL+ +LQ LLP++ + R+ + S S  K+++ETC++I  L  EV DL ERL+EL
Sbjct: 12 FTESEINDLMLRLQALLPQLNQTRNSRASESLMKIMKETCSHINRLQNEVKDLGERLAEL 71

Query: 75 LATTD 79
          + + D
Sbjct: 72 IDSVD 76


>Glyma04g33920.1 
          Length = 92

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRE---RRSDKVSASKVLQETCNYIRSLHREVDDLSERLSE 73
           T+ +I+DL+ +LQ LLP++ +    R+  VS  K+++ETC++I  L +EV DL ERL +
Sbjct: 12 FTESEINDLMLRLQALLPQLNQTSNSRASSVSVMKIMKETCSHITRLQKEVKDLGERLVQ 71

Query: 74 LLATTD 79
          L+ + D
Sbjct: 72 LMDSVD 77