Miyakogusa Predicted Gene

Lj0g3v0123729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123729.1 Non Chatacterized Hit- tr|C0P5F8|C0P5F8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,46.02,5e-19,Translational machinery components,NULL; STRUCTURAL
CONSTITUENT OF RIBOSOME,NULL; 39S RIBOSOMAL PROT,CUFF.7429.1
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g46620.2                                                       362   e-100
Glyma06g46620.1                                                       362   e-100
Glyma04g14470.1                                                       358   2e-99
Glyma04g14470.2                                                       296   1e-80
Glyma08g25990.1                                                       112   3e-25
Glyma12g00280.1                                                       110   1e-24
Glyma11g00790.1                                                       107   6e-24
Glyma01g44860.1                                                        81   5e-16
Glyma02g47730.1                                                        61   9e-10
Glyma14g00900.2                                                        60   2e-09
Glyma14g00900.1                                                        60   2e-09

>Glyma06g46620.2 
          Length = 202

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 178/187 (95%)

Query: 1   MLKQAIGRICRTSVYTCEVNGVLPWNYVPSCCFHSGQAHMAPRSFFGVEDFLDDDNSRPY 60
           MLKQ IGRICRT VY CE N VLPW YVPSC FH GQAHMAPRSFFGVEDFLDDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSK 120
           TYQKGKKSKNPNKH+SFKQRT+AYMEPFTLDVFISKRFVSAS+THRVTSKQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
           DIKAVLRSRSDIPACIAIGRIL+ERA+EADVYT SYTPRDRDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DIKVYLD 187
           DIKVYLD
Sbjct: 196 DIKVYLD 202


>Glyma06g46620.1 
          Length = 202

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 178/187 (95%)

Query: 1   MLKQAIGRICRTSVYTCEVNGVLPWNYVPSCCFHSGQAHMAPRSFFGVEDFLDDDNSRPY 60
           MLKQ IGRICRT VY CE N VLPW YVPSC FH GQAHMAPRSFFGVEDFLDDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSK 120
           TYQKGKKSKNPNKH+SFKQRT+AYMEPFTLDVFISKRFVSAS+THRVTSKQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
           DIKAVLRSRSDIPACIAIGRIL+ERA+EADVYT SYTPRDRDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DIKVYLD 187
           DIKVYLD
Sbjct: 196 DIKVYLD 202


>Glyma04g14470.1 
          Length = 187

 Score =  358 bits (919), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/187 (91%), Positives = 177/187 (94%)

Query: 1   MLKQAIGRICRTSVYTCEVNGVLPWNYVPSCCFHSGQAHMAPRSFFGVEDFLDDDNSRPY 60
           MLKQAIGRI RT VY CE N VLPW YVPS  FH GQAHMAPRSFFGVEDFLDDDNSRPY
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVLPWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSK 120
           TYQKGKKSKNPNKH+SFKQRT+AYMEPFTLDVFISKRFVSAS+THRVTSKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
           DIKAVLRSRSDIPACIAIGRIL+ERA+EADVYT SYTPRDRDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DIKVYLD 187
           DIKVYLD
Sbjct: 181 DIKVYLD 187


>Glyma04g14470.2 
          Length = 148

 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/148 (95%), Positives = 147/148 (99%)

Query: 40  MAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFV 99
           MAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKH+SFKQRT+AYMEPFTLDVFISKRFV
Sbjct: 1   MAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFV 60

Query: 100 SASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILSERAREADVYTASYTPR 159
           SAS+THRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRIL+ERA+EADVYT SYTPR
Sbjct: 61  SASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPR 120

Query: 160 DRDKFEGKIRAVVQSLIDNGIDIKVYLD 187
           DRDKFEGKIRAVVQSLIDNGIDIKVYLD
Sbjct: 121 DRDKFEGKIRAVVQSLIDNGIDIKVYLD 148


>Glyma08g25990.1 
          Length = 197

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 80/118 (67%), Gaps = 1/118 (0%)

Query: 63  QKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDI 122
            +G+ +K PN+  S+KQRT  YM PF L+VF SKRF+ A V HR TSK + VA TN+KD+
Sbjct: 78  SRGEAAKKPNRK-SWKQRTDMYMRPFLLNVFFSKRFIHAKVVHRGTSKVICVATTNAKDL 136

Query: 123 KAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
           +  L S  D  AC  +G +++ER+ EADVY  +Y PR  ++ EG++  V+ ++ +NGI
Sbjct: 137 RNSLPSLIDHNACRVVGNLIAERSMEADVYAVAYEPRKDERIEGRLGIVLDTIKENGI 194


>Glyma12g00280.1 
          Length = 197

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 1/118 (0%)

Query: 63  QKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDI 122
            +G+ +K PN+  S+KQRT  YM PF L+VF SKRF+ A V HR TSK + VA TN+KD+
Sbjct: 78  SRGEAAKKPNRK-SWKQRTDMYMRPFLLNVFFSKRFIHAKVVHRGTSKVICVATTNAKDL 136

Query: 123 KAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
           +  L S  D  AC  +G ++++R+ EADVY  +Y PR  ++ EG++  V+ ++ +NGI
Sbjct: 137 RNSLPSLIDHNACRVVGNLIAQRSMEADVYAVAYEPRKDERIEGRLGIVLDTIKENGI 194


>Glyma11g00790.1 
          Length = 272

 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 75/111 (67%)

Query: 76  SFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPAC 135
           +F Q T  Y EPF LD+FISK  V A V HRVTSK VAVA + SKD K  L S  +   C
Sbjct: 151 TFNQLTGPYHEPFCLDIFISKASVRACVVHRVTSKVVAVAHSISKDFKFDLASTKNKTTC 210

Query: 136 IAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDIKVYL 186
            A+G IL++RA   D++   YTPR  ++ EGK++ V+QS+IDNGI++KV +
Sbjct: 211 AAVGAILAQRALADDIHDIVYTPRKGERVEGKLQIVLQSIIDNGINVKVKI 261


>Glyma01g44860.1 
          Length = 213

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 76  SFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPAC 135
           +F Q T  Y EP  LD+F+SK +V A + HRVTSK VAVA + SK IK  L S  +   C
Sbjct: 122 TFNQLTGPYHEPLCLDIFVSKAWVRACIVHRVTSKVVAVAHSISKGIKFDLASTKNKTTC 181

Query: 136 IAIGRILSERAREADVYTASYTPRDRDKFEGKI 168
            A+G IL++RA   D++   YTPR +++ EGK+
Sbjct: 182 AAVGAILAQRALADDIHDVIYTPR-KERVEGKL 213


>Glyma02g47730.1 
          Length = 114

 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%)

Query: 84  YMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILS 143
           +++P+ L +  + ++VSA V H  T+   + A +  K +++ L +  D+ A   IG+IL+
Sbjct: 15  FLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETSRDVAAAAKIGKILA 74

Query: 144 ERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDI 182
           ER    D+   S   +   K+ GK++AV+ S+ + G+ +
Sbjct: 75  ERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKL 113


>Glyma14g00900.2 
          Length = 114

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%)

Query: 84  YMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILS 143
           +++P+ L +  + ++VSA V H  T+   + A +  K +++ L +  D+ A   IG+IL+
Sbjct: 15  FLKPYVLKMNFTNKYVSAQVIHSPTATVASSASSQEKALRSSLETSRDVAAAAKIGKILA 74

Query: 144 ERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDI 182
           ER    ++   S   +   K+ GK++AV+ SL + G+ +
Sbjct: 75  ERLLLKNIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113


>Glyma14g00900.1 
          Length = 114

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%)

Query: 84  YMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILS 143
           +++P+ L +  + ++VSA V H  T+   + A +  K +++ L +  D+ A   IG+IL+
Sbjct: 15  FLKPYVLKMNFTNKYVSAQVIHSPTATVASSASSQEKALRSSLETSRDVAAAAKIGKILA 74

Query: 144 ERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDI 182
           ER    ++   S   +   K+ GK++AV+ SL + G+ +
Sbjct: 75  ERLLLKNIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113