Miyakogusa Predicted Gene

Lj0g3v0122759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0122759.1 Non Chatacterized Hit- tr|J3LDG8|J3LDG8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G2,56.32,4e-19,DUF4137,Putative sodium bile acid cotransporter;
GB DEF: HYPOTHETICAL PROTEIN F18O21_120,NULL; FAMIL,CUFF.7343.1
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g14310.1                                                       142   1e-34

>Glyma10g14310.1 
          Length = 426

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 89/154 (57%), Gaps = 12/154 (7%)

Query: 1   MAGAAHSLVLTALPATGSSFPRRNVLFPASHRLPSAVKLVTLRSAVCVAHRRKHSPVRVC 60
           M   AHSL LT  PAT SSF          HR   AVK +TLRS   V  R K + VR C
Sbjct: 20  MEPMAHSLTLTPFPATASSF---------RHRHLYAVKALTLRS---VTRRLKPALVRAC 67

Query: 61  AQSQEMXXXXXXXXXXXXWAEPIFRFARSNXXXXXXXXXXXXXXXYPSLGCAVDKYNVSK 120
            +SQ+M            W EPI  FAR N               YPS+GC  DKY VSK
Sbjct: 68  DRSQQMGGNGSKETKGLSWVEPILTFARRNILPLALVSAVTLGLTYPSIGCVADKYGVSK 127

Query: 121 LGPFGIFVISGLLLRSEEIGAALEAWPVGLFGLV 154
           +GPFGIFVISGL+LRSEEIGAA+EAWPVGLFGLV
Sbjct: 128 IGPFGIFVISGLMLRSEEIGAAVEAWPVGLFGLV 161