Miyakogusa Predicted Gene

Lj0g3v0120319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0120319.1 tr|D7LTK1|D7LTK1_ARALL Clathrin adaptor complex
small chain family protein OS=Arabidopsis lyrata
sub,73.68,7e-19,ADAPTOR-RELATED PROTEIN COMPLEX 3,NULL; CLATHRIN COAT
ASSEMBLY PROTEIN,Adaptor protein complex, sigm,CUFF.7142.1
         (58 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g06350.2                                                       110   3e-25
Glyma02g06350.1                                                       110   3e-25
Glyma16g25400.1                                                       106   5e-24
Glyma16g25400.2                                                        52   1e-07

>Glyma02g06350.2 
          Length = 166

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 54/58 (93%)

Query: 1  MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGP 58
          MI+AVLVLNTQGKPRL+KFYE+Q VEKQ   IRNVF+VLCSRPEHVSNFVDAESFFGP
Sbjct: 1  MIKAVLVLNTQGKPRLAKFYEFQSVEKQHDAIRNVFSVLCSRPEHVSNFVDAESFFGP 58


>Glyma02g06350.1 
          Length = 166

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 54/58 (93%)

Query: 1  MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGP 58
          MI+AVLVLNTQGKPRL+KFYE+Q VEKQ   IRNVF+VLCSRPEHVSNFVDAESFFGP
Sbjct: 1  MIKAVLVLNTQGKPRLAKFYEFQSVEKQHDAIRNVFSVLCSRPEHVSNFVDAESFFGP 58


>Glyma16g25400.1 
          Length = 166

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 54/58 (93%)

Query: 1  MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGP 58
          MI+AVLVLNT+GKPRL+KFY++Q VEKQ + IRNVF+VLC RPEHVSNFVDAESFFGP
Sbjct: 1  MIKAVLVLNTEGKPRLAKFYQFQSVEKQHEAIRNVFSVLCCRPEHVSNFVDAESFFGP 58


>Glyma16g25400.2 
          Length = 164

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/23 (95%), Positives = 22/23 (95%)

Query: 36 FAVLCSRPEHVSNFVDAESFFGP 58
          FAVLC RPEHVSNFVDAESFFGP
Sbjct: 34 FAVLCCRPEHVSNFVDAESFFGP 56