Miyakogusa Predicted Gene

Lj0g3v0117519.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0117519.1 tr|B9IIP7|B9IIP7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_777371 PE=4
SV=1,41.03,5e-16,ZF_CCHC,Zinc finger, CCHC-type; zf-CCHC,Zinc finger,
CCHC-type; zinc finger,Zinc finger, CCHC-type; ,CUFF.6923.1
         (570 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g36030.1                                                       113   6e-25
Glyma10g08960.1                                                       103   5e-22
Glyma02g36020.1                                                        65   2e-10

>Glyma02g36030.1 
          Length = 269

 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 85/133 (63%), Gaps = 2/133 (1%)

Query: 134 CGESGHKMRNCPKEHSSGRKYDWSDVGQNSRINQDHRVEDDNKIGSGSLVKLQSSGDTLS 193
           CG+ GHK+RNCPKEH+S RKY+  DV QN+RI++ H+ ED NK  S SL KLQS+ + LS
Sbjct: 1   CGDPGHKIRNCPKEHTSQRKYNRLDVWQNNRIDKKHKSEDVNKFESDSLAKLQSNLEPLS 60

Query: 194 MRRQR-GTRMSGSRHNRALSRKESPPPVINETDXXXXXXXXXXXXXXNESESPTRSWAKI 252
           +R QR G R+SGSRH+ A  R ES P    ETD              N+ E P +S AKI
Sbjct: 61  LRHQRDGRRLSGSRHHHAPWRNESFPGA-RETDRHKKKEYVGKKRSRNDIELPKQSNAKI 119

Query: 253 SKWSDSSPVPADY 265
           SK S SS + +DY
Sbjct: 120 SKRSVSSSLLSDY 132



 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 2/61 (3%)

Query: 334 LSSIPTKFQLNAKSSSINGTACENVDHLVSQGQQIGSTMGLEYPQIQSKDTCIAVNGKAA 393
           LSS P K QLN+K+SSINGTA E+V+HLV+QGQQIGS M L+   +QSK T +AVNGKAA
Sbjct: 197 LSSSPNKIQLNSKASSINGTALESVEHLVAQGQQIGSKMELD--NLQSKGTGVAVNGKAA 254

Query: 394 V 394
           V
Sbjct: 255 V 255


>Glyma10g08960.1 
          Length = 269

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 53/68 (77%)

Query: 3   EAGRGKSVEVPGEEGGYHEDDFKDYAGEEKDYGGSFPDEGGGAVPNLEDNGGWNEPTHDP 62
           + GRGKSVE+ GEE GY  DDFKDY GE+K+Y G FP+EGGG VPN E+NGGW EP HDP
Sbjct: 123 KMGRGKSVEMAGEERGYCRDDFKDYVGEKKNYEGDFPNEGGGVVPNKEENGGWGEPVHDP 182

Query: 63  SVDNEKGN 70
            VDN  G+
Sbjct: 183 LVDNGNGS 190


>Glyma02g36020.1 
          Length = 166

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 32/41 (78%)

Query: 3   EAGRGKSVEVPGEEGGYHEDDFKDYAGEEKDYGGSFPDEGG 43
           + GRGKSVE+P EE GY  DDFKDY GEEK +GG FP EGG
Sbjct: 106 KMGRGKSVEMPSEERGYRHDDFKDYVGEEKKFGGDFPYEGG 146