Miyakogusa Predicted Gene

Lj0g3v0116369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116369.1 tr|Q6YWF9|Q6YWF9_ORYSJ Nucleoporin-like protein
OS=Oryza sativa subsp. japonica GN=OSJNBb0018G11.20
,43.14,0.000000000000002,Nup160,Nucleoporin Nup120/160,CUFF.6831.1
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g06230.1                                                       246   6e-66
Glyma13g20540.1                                                       243   6e-65

>Glyma10g06230.1 
          Length = 1464

 Score =  246 bits (629), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 139/165 (84%), Gaps = 13/165 (7%)

Query: 11  MGTGSTLVGKEVPIIGSDAVRWIDLSVPSSANI----------XPDARASCPAIGDPTTY 60
           MGTGSTL GKEVPI+GSDAVRWIDLSVPSS+NI            D RASC  IGDP TY
Sbjct: 1   MGTGSTLAGKEVPIVGSDAVRWIDLSVPSSSNIAAVDGVAALPTTDDRASCFVIGDPPTY 60

Query: 61  LIWRIHKAHPQSLELLEVSASKEFPRLGLRFTFPEALCPFAFICKNEISGSSSRFPYLLY 120
           LIWRIHKA PQSLELLE++ASKEFPR+GLRFTFP+ALCPFAFI KNEISG +SRFPYLLY
Sbjct: 61  LIWRIHKAQPQSLELLELAASKEFPRVGLRFTFPDALCPFAFIGKNEISG-ASRFPYLLY 119

Query: 121 VLTVSGLAYLLRIRNVSAYASCSISIIPVDELLELDIRGYVSNNA 165
           VLTVSG+AYLL+IRNVSAY   S+S+ PVDELLE+++R Y+ N+A
Sbjct: 120 VLTVSGVAYLLKIRNVSAYT--SVSVFPVDELLEVNVRDYIPNHA 162


>Glyma13g20540.1 
          Length = 1252

 Score =  243 bits (621), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 137/165 (83%), Gaps = 14/165 (8%)

Query: 11  MGTGSTLVGKEVPIIGSDAVRWIDLSVPSSANI-----------XPDARASCPAIGDPTT 59
           MGTGSTL  KEVPI+GSDAVRWIDLSVPSS+NI             D RASC  IGDP T
Sbjct: 1   MGTGSTLASKEVPIVGSDAVRWIDLSVPSSSNIAAVDDGGAAPLTTDDRASCFVIGDPPT 60

Query: 60  YLIWRIHKAHPQSLELLEVSASKEFPRLGLRFTFPEALCPFAFICKNEISGSSSRFPYLL 119
           YLIWRIHKA P SLELLE++ASKEFPR+GLRFTFP+ALCPFAFICKNEISG +SR PYLL
Sbjct: 61  YLIWRIHKAQPHSLELLELAASKEFPRVGLRFTFPDALCPFAFICKNEISG-ASRVPYLL 119

Query: 120 YVLTVSGLAYLLRIRNVSAYASCSISIIPVDELLELDIRGYVSNN 164
           YVLTVSG+AYLL+IRNVS YA  S+S+ PVDELLE+++RGY+ N+
Sbjct: 120 YVLTVSGVAYLLKIRNVSVYA--SVSVFPVDELLEVNVRGYIPNH 162