Miyakogusa Predicted Gene
- Lj0g3v0113539.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0113539.1 tr|Q9LMT2|Q9LMT2_ARATH At1g17980 OS=Arabidopsis
thaliana GN=F2H15.20 PE=2 SV=1,74.14,5e-19,PAP_RNA-bind,Poly(A)
polymerase, RNA-binding domain; PAP/Archaeal CCA-adding enzyme,
C-terminal doma,CUFF.6601.1
(74 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g31080.1 102 1e-22
Glyma07g11140.1 101 2e-22
Glyma05g34210.1 96 1e-20
Glyma07g01780.1 70 6e-13
Glyma08g21440.1 68 2e-12
Glyma06g09310.2 68 3e-12
Glyma06g09310.1 67 3e-12
Glyma06g09310.3 67 3e-12
Glyma06g09310.4 67 3e-12
Glyma06g09310.7 67 4e-12
Glyma06g09310.6 67 4e-12
Glyma06g09310.5 67 4e-12
Glyma04g09170.1 64 4e-11
Glyma04g09170.2 64 5e-11
>Glyma09g31080.1
Length = 757
Score = 102 bits (253), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTL 57
MLQCHPHPG+FSD SRP + YFMGLQRKQG P NEGEQFDIRL +E+FKH++N YTL
Sbjct: 409 MLQCHPHPGEFSDNSRPFHHCYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNAYTL 466
>Glyma07g11140.1
Length = 795
Score = 101 bits (252), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTL 57
MLQCHPHPG+FSD SRP + YFMGLQRKQG P NEGEQFDIRL +E+FKH++N YTL
Sbjct: 409 MLQCHPHPGEFSDNSRPFHHCYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNAYTL 466
>Glyma05g34210.1
Length = 674
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTL 57
MLQCHPHPGD SDKSRP +C FM LQRKQG P N+G QFDIRL +E+FKH++N+YTL
Sbjct: 391 MLQCHPHPGDSSDKSRPFHCSNFMALQRKQGVPVNDGGQFDIRLTVEEFKHSVNIYTL 448
>Glyma07g01780.1
Length = 532
Score = 69.7 bits (169), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+ +F D SR +C +FMGLQRKQG EG+QFDIR +E+F+H++NMY
Sbjct: 408 LQCHPYHHEFVDTSRLCAHCAFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMY 463
>Glyma08g21440.1
Length = 694
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+ +F D SR +C +FMGL RK+G EG+QFDIR +E+F+H++NMY
Sbjct: 408 LQCHPYHHEFVDTSRQCAHCAFFMGLHRKEGEVVQEGQQFDIRGTVEEFRHSVNMY 463
>Glyma06g09310.2
Length = 725
Score = 67.8 bits (164), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+P + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 417 MLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 473
>Glyma06g09310.1
Length = 732
Score = 67.4 bits (163), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+P + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 417 MLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 473
>Glyma06g09310.3
Length = 727
Score = 67.4 bits (163), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+P + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 417 MLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 473
>Glyma06g09310.4
Length = 721
Score = 67.4 bits (163), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+P + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 417 MLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 473
>Glyma06g09310.7
Length = 650
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+P + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 417 MLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 473
>Glyma06g09310.6
Length = 650
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+P + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 417 MLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 473
>Glyma06g09310.5
Length = 650
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+P + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 417 MLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 473
>Glyma04g09170.1
Length = 726
Score = 63.9 bits (154), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+ + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 416 MLQCHPYPNEYVDTSKLCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 472
>Glyma04g09170.2
Length = 651
Score = 63.5 bits (153), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P ++ D S+ + +FMGLQRK+G EG+QFDIR +++F+ INMY
Sbjct: 416 MLQCHPYPNEYVDTSKLCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMY 472