Miyakogusa Predicted Gene
- Lj0g3v0113489.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0113489.1 Non Chatacterized Hit- tr|I3T039|I3T039_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,83.59,0,SUBFAMILY NOT NAMED,NULL; 5-FORMYLTETRAHYDROFOLATE
CYCLO-LIGASE-RELATED,NULL; no description,5-formy,CUFF.6599.1
(360 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma16g27960.1 521 e-148
Glyma02g08860.1 459 e-129
Glyma03g19910.1 87 2e-17
Glyma13g04290.1 79 9e-15
Glyma18g15400.1 79 1e-14
Glyma11g32290.1 60 4e-09
>Glyma16g27960.1
Length = 348
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/355 (76%), Positives = 292/355 (82%), Gaps = 15/355 (4%)
Query: 9 LSYPSMLTKTNHHILPSLWNTTTRCNNLPSLALNPRTRSSRWLFKLESSKSETXXXXXXX 68
LS+ ML+ TN H SL C L SL+ NPR +RW FK+E++ +
Sbjct: 6 LSHSFMLS-TNIHSPSSL------CT-LRSLSTNPR---NRW-FKVEATAGGSQKKNNNK 53
Query: 69 XXXXXXXXXXXXXX-XXXXSSLRD--DPKAWKWVIRKRIWDAMEAQNFAQNPRPVHHRIP 125
++ D DPKAWKW+IRKRIWD MEA+NFA NPRPVHHRIP
Sbjct: 54 AFDAAAFEAERLALDAEARRTMADAADPKAWKWIIRKRIWDMMEARNFANNPRPVHHRIP 113
Query: 126 NFVGANAAAEKMRGLDVFQVAQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSV 185
NFVGA+ AAEKMR LDVFQ AQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSV
Sbjct: 114 NFVGASVAAEKMRELDVFQDAQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSV 173
Query: 186 LESDKLSIGTIKEACTSVGVAKHGRPIGLDEKIKVDLIVIGSVAVDPRTGARLGKGEGFA 245
L+S+ L++ TIKEACTSVGVAKHGRPIGLDEKIKVDLIVIGSVAVDP+TGARLGKGEGFA
Sbjct: 174 LDSNMLTLDTIKEACTSVGVAKHGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFA 233
Query: 246 ELEYGMLRYMGAIDDSTQVVTLVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTRTSI 305
ELEYGMLRYMGAIDDST+VVT VHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFT TSI
Sbjct: 234 ELEYGMLRYMGAIDDSTRVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTSI 293
Query: 306 PKPQGIYWDKLSPEKLGQVRILRELKKRIERETGQKLPTGPSEKLPPTAQRSRRG 360
PKPQGIYWDKLSPEKLGQVRILRELKKRIE+ETGQKLPTGPSEKLPPTAQRSRRG
Sbjct: 294 PKPQGIYWDKLSPEKLGQVRILRELKKRIEQETGQKLPTGPSEKLPPTAQRSRRG 348
>Glyma02g08860.1
Length = 359
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/315 (75%), Positives = 248/315 (78%), Gaps = 47/315 (14%)
Query: 93 PKAWKWVIRKRIWDAMEAQNFAQNPRPVHHRIPNFVGANAAAEKMRGLDVFQVAQCVKVN 152
PKAWKWVIRKRIWD MEA+NFA NPRPVHHRIPNFVGA+ AAEKMR LDVFQVAQCVKVN
Sbjct: 45 PKAWKWVIRKRIWDVMEARNFANNPRPVHHRIPNFVGASVAAEKMRELDVFQVAQCVKVN 104
Query: 153 PDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSVLESDKLSIGTIKEACTSVGVAKHGRPI 212
PDSPQKQVRFLTLSDGKKLLTPQPR RTGFFSVL+S+ L++ TIKEACTSVGVAKHG+PI
Sbjct: 105 PDSPQKQVRFLTLSDGKKLLTPQPRPRTGFFSVLDSNMLTLDTIKEACTSVGVAKHGQPI 164
Query: 213 GLDEKIKVDLIVIGSVAVDPRT-------------------------GARLGKGE----- 242
GLD+KIKVDLIVIGSVAVDPRT A G E
Sbjct: 165 GLDKKIKVDLIVIGSVAVDPRTVNLGATVRLLPCDLVLMDSNPTDSLSAYEGGAEYIYPP 224
Query: 243 --------GFAELEYGMLRYMGAIDDSTQVVTLVHDCQLVDDIPVEKLLIHDVPVDIICT 294
G AELEYGMLRYMGAIDDST VVT VHDCQLVDDIPVEKLLIHDVPVDIICT
Sbjct: 225 ETSLVVSLGIAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPVEKLLIHDVPVDIICT 284
Query: 295 PTQVIFTRTSIPKPQG---------IYWDKLSPEKLGQVRILRELKKRIERETGQKLPTG 345
PTQVIFT T +PKPQ IYWDKLSPEKLGQ+RILRE KKRIE+ETGQKLPTG
Sbjct: 285 PTQVIFTNTFMPKPQPLQRCNLCTRIYWDKLSPEKLGQIRILREFKKRIEQETGQKLPTG 344
Query: 346 PSEKLPPTAQRSRRG 360
PSEKLPP AQRSRRG
Sbjct: 345 PSEKLPPIAQRSRRG 359
>Glyma03g19910.1
Length = 164
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 59/100 (59%), Gaps = 21/100 (21%)
Query: 230 VDPRTGARLGKGEGFAELEYGMLRYMG--------------------AIDDSTQVVTLVH 269
VD G+ G +G AELEYGMLR + A+ + ++VH
Sbjct: 15 VDQVRGSDFGL-QGIAELEYGMLRLLPLAVPPYHFVMCSHIHYLLILAMCKICNLSSVVH 73
Query: 270 DCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTRTSIPKPQ 309
DCQLVDDI VEKLLIHDVPVDIICTPTQVIFT +PK Q
Sbjct: 74 DCQLVDDILVEKLLIHDVPVDIICTPTQVIFTNAFMPKLQ 113
>Glyma13g04290.1
Length = 145
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 37/42 (88%)
Query: 269 HDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTRTSIPKPQG 310
HDCQLVDDIPVEKLLIHDVPVDII T TQVIF SIPKPQG
Sbjct: 85 HDCQLVDDIPVEKLLIHDVPVDIIYTSTQVIFRNRSIPKPQG 126
>Glyma18g15400.1
Length = 167
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 41/49 (83%), Gaps = 2/49 (4%)
Query: 268 VHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTRTSIPKPQGIYWDKL 316
VHDCQLVD+I VEKLLIHDVPVDIICTPTQVIFT T +PK Q WD L
Sbjct: 73 VHDCQLVDNILVEKLLIHDVPVDIICTPTQVIFTNTFMPKLQ--VWDLL 119
>Glyma11g32290.1
Length = 29
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 268 VHDCQLVDDIPVEKLLIHDVPVDIICTP 295
VHDCQLVDDI VEK+LIHDVPVDIICTP
Sbjct: 1 VHDCQLVDDILVEKMLIHDVPVDIICTP 28